CoexViewer
Coexpression detail for NRB4 and KAK
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | NRB4 | mediator of RNA polymerase II transcription subunit 15a-like protein | 838147 | At1g15780 | 0.88 | 8.55 | 7.34 | 7.44 | 3.60 | 1.91 | 4.20 | 4.66 | 3.50 | 3.13 | 7.60 | |
| ath | KAK | HECT ubiquitin protein ligase family protein KAK | 830017 | At4g38600 | 0.88 |
|
coex z = 7.3431 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 838147 (z-scored expression) |
830017 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 48.7 | -7.5 | -6.5 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 38.6 | -6.3 | -6.1 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 32.4 | -5.6 | -5.8 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 25.0 | -4.9 | -5.1 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 21.6 | -4.8 | -4.5 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 21.3 | 5.0 | 4.3 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 19.2 | -4.5 | -4.3 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 19.0 | -4.3 | -4.4 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 18.7 | -4.9 | -3.8 | SRP103817 | SRR5444474 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 18.6 | 4.7 | 4.0 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 18.1 | 4.3 | 4.2 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 17.6 | -4.3 | -4.1 | SRP277946 | SRR12469574 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 17.6 | -3.6 | -4.9 | SRP282437 | SRR12642226 | Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids |
| 16.8 | -3.8 | -4.4 | SRP220476 | SRR10072740 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 16.0 | -3.9 | -4.1 | SRP220476 | SRR10072738 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 15.7 | -3.8 | -4.2 | SRP220476 | SRR10072739 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 15.5 | -4.0 | -3.9 | SRP093913 | SRR5054306 | Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis |
| 15.3 | -3.7 | -4.2 | SRP103817 | SRR5444476 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 15.0 | -3.9 | -3.8 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 14.9 | 3.7 | 4.1 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.9 | -3.8 | -3.9 | SRP198083 | SRR9045751 | Role of cis-zeatin in root responses to phosphate starvation |
| 14.4 | 3.1 | 4.6 | SRP266133 | SRR11934683 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 14.0 | -3.9 | -3.6 | SRP281951 | SRR12620957 | RNA-Seq experiment on Arabidopsis seedlings regarding SLIM1 and EIL1 function at low S |
| 13.8 | -3.9 | -3.5 | SRP277946 | SRR12469806 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.7 | -3.5 | -3.9 | SRP076846 | SRR3707344 | The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq) |
| 13.6 | 3.8 | 3.5 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 13.4 | 3.5 | 3.8 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.4 | -3.4 | -3.9 | SRP063017 | SRR2221848 | RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes |
| 13.4 | 3.4 | 3.9 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.4 | -2.9 | -4.6 | SRP090913 | SRR4360366 | WallOmics |
| 13.3 | 3.6 | 3.7 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 13.3 | -4.1 | -3.2 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 13.2 | -3.6 | -3.7 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 13.2 | 3.6 | 3.7 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 13.1 | 3.6 | 3.7 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.0 | 3.7 | 3.5 | SRP277946 | SRR12470201 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.0 | -3.4 | -3.9 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 13.0 | -3.6 | -3.7 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 12.8 | 3.8 | 3.3 | SRP103736 | SRR5440785 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 12.8 | -2.9 | -4.3 | SRP114806 | SRR5894725 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 12.8 | -3.6 | -3.6 | SRP097877 | SRR5205677 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 12.7 | -3.6 | -3.5 | SRP126872 | SRR6381404 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 12.7 | -3.6 | -3.5 | SRP126872 | SRR6381405 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 12.6 | -3.6 | -3.4 | SRP199288 | SRR9113125 | In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size |
| 12.3 | -3.4 | -3.6 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 12.2 | -3.5 | -3.5 | ERP115370 | ERR3333439 | Arabidopsis tissue atlas |
| 12.1 | -3.4 | -3.6 | SRP269252 | SRR12110257 | Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length |
| 12.1 | -3.4 | -3.6 | ERP115370 | ERR3333436 | Arabidopsis tissue atlas |
| 12.1 | -3.6 | -3.3 | ERP116123 | ERR3414638 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 12.0 | -3.5 | -3.5 | SRP251062 | SRR11206305 | Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants |
| 11.9 | -3.8 | -3.2 | ERP116123 | ERR3414637 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 11.9 | -3.0 | -4.0 | SRP137763 | SRR6950045 | The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq t vs t0] |
| 11.6 | 3.5 | 3.3 | SRP277946 | SRR12469632 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.5 | -3.5 | -3.3 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 11.3 | -2.9 | -3.9 | SRP103817 | SRR5444475 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 11.2 | -3.6 | -3.1 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.1 | 3.4 | 3.3 | SRP029957 | SRR988015 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 11.0 | -3.8 | -2.9 | SRP297585 | SRR13239294 | mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos |
| 10.9 | -3.1 | -3.6 | SRP100080 | SRR5264217 | Ascorbate concentration in Arabidopsis is controlled at the gene expression level mainly by GDP galactose phosphorylase |
| 10.9 | 3.1 | 3.5 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.7 | -2.9 | -3.7 | SRP277946 | SRR12469866 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.7 | -3.6 | -2.9 | SRP277946 | SRR12469812 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.7 | 3.3 | 3.3 | SRP103736 | SRR5440786 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 10.6 | -3.8 | -2.8 | SRP119072 | SRR6113964 | Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana |
| 10.6 | -3.3 | -3.2 | SRP114806 | SRR5894687 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 10.4 | -3.0 | -3.4 | SRP279149 | SRR12538995 | RNA-seq of Arabidopsis thaliana seedlings exposed to different communities of commensal bacteria [SSC] |
| 10.3 | 3.1 | 3.3 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 10.3 | -3.3 | -3.1 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 10.2 | 3.2 | 3.2 | SRP189792 | SRR8800692 | Role of AtMLKLs in response to powdery mildew fungus |
| 10.2 | -2.9 | -3.5 | SRP162520 | SRR7899134 | Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings. |
| 10.2 | 3.5 | 2.9 | SRP277946 | SRR12469638 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.1 | -3.3 | -3.1 | SRP155742 | SRR8699957 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 10.1 | 3.2 | 3.1 | SRP277946 | SRR12470067 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.1 | -3.3 | -3.0 | SRP357889 | SRR17847283 | Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling. |
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