CoexViewer

Coexpression detail for NRB4 and UBP12
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath NRB4 mediator of RNA polymerase II transcription subunit 15a-like protein 838147 At1g15780 0.88 6.59 6.13 5.28 111.10 1.53 2.04 1.54 2.95 0.59 5.06
ath UBP12 ubiquitin-specific protease 12 830548 At5g06600 0.88
Platform:

coex z = 6.1293



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 838147
(z-scored expression)		 830548
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
39.4 -7.5 -5.3 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
38.2 -6.3 -6.1 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
32.0 -5.6 -5.7 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
26.3 -4.9 -5.3 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
24.3 5.0 4.9 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
22.2 4.7 4.7 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
19.9 -4.5 -4.4 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
18.8 4.3 4.4 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
18.3 -4.3 -4.3 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
17.7 -4.8 -3.7 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
15.9 -4.9 -3.3 SRP103817 SRR5444474 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
15.1 -4.0 -3.8 SRP093913 SRR5054306 Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
15.1 -3.9 -3.8 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
15.0 3.7 4.1 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.6 3.8 3.8 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
14.4 -3.0 -4.7 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
14.4 -3.6 -4.1 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
14.3 -4.1 -3.5 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
14.1 -3.6 -3.9 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
13.8 -3.9 -3.6 SRP281951 SRR12620957 RNA-Seq experiment on Arabidopsis seedlings regarding SLIM1 and EIL1 function at low S
13.8 3.4 4.1 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.7 -4.3 -3.2 SRP277946 SRR12469574 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.6 3.6 3.8 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
13.5 3.9 3.5 SRP017386 SRR627642 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
13.4 3.6 3.7 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.2 3.7 3.6 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.2 3.6 3.6 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.9 3.5 3.7 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.7 3.1 4.1 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
12.6 -3.4 -3.7 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
12.4 -3.5 -3.6 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
12.4 -3.6 -3.4 SRP126872 SRR6381404 B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
12.3 3.8 3.2 SRP103736 SRR5440785 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
12.2 -3.6 -3.4 SRP282437 SRR12642226 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
12.1 -3.5 -3.5 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
12.1 3.5 3.5 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.0 -3.4 -3.5 SRP119072 SRR6113963 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
12.0 -3.4 -3.6 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
12.0 -3.4 -3.5 ERP115370 ERR3333436 Arabidopsis tissue atlas
11.9 -3.6 -3.4 SRP097877 SRR5205677 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.9 -3.8 -3.2 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
11.9 -3.7 -3.3 SRP103817 SRR5444476 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
11.8 3.4 3.5 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.8 -3.8 -3.1 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
11.7 -3.6 -3.3 SRP150771 SRR7357980 RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
11.6 -3.6 -3.2 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
11.5 -3.5 -3.3 ERP115370 ERR3333439 Arabidopsis tissue atlas
11.5 3.5 3.3 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.5 3.4 3.3 SRP017386 SRR627641 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
11.4 3.1 3.7 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
11.4 -3.4 -3.3 SRP119072 SRR6113965 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
11.3 -2.6 -4.4 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
11.3 -3.6 -3.1 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.3 -3.8 -3.0 SRP198083 SRR9045751 Role of cis-zeatin in root responses to phosphate starvation
11.3 -3.4 -3.4 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
11.3 -3.2 -3.5 ERP115370 ERR3333437 Arabidopsis tissue atlas
11.3 3.2 3.5 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
11.2 3.1 3.7 SRP277946 SRR12470065 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.1 -3.8 -2.9 SRP119072 SRR6113964 Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana
11.0 3.2 3.4 SRP277946 SRR12470067 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.6 2.9 3.7 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
10.5 -3.6 -2.9 SRP277946 SRR12469812 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.5 -3.8 -2.8 SRP220476 SRR10072739 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.5 -3.1 -3.4 SRP371011 SRR18808259 Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
10.4 -3.1 -3.3 ERP116123 ERR3414642 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.3 -2.9 -3.5 SRP103817 SRR5444475 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
10.3 3.1 3.4 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
10.2 -3.3 -3.1 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
10.2 3.1 3.3 SRP277946 SRR12470066 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.2 -3.4 -3.0 SRP133652 SRR6791988 The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs [mRNA]
10.2 -3.9 -2.6 SRP277946 SRR12469806 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 3.4 3.0 SRP095347 SRR5120422 Genetic influences on gene expression in Arabidopsis thaliana
10.1 -3.4 -3.0 SRP150217 SRR7289615 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.1 3.1 3.3 SRP277946 SRR12469846 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.0 -3.4 -2.9 SRP063017 SRR2221848 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
10.0 -3.5 -2.9 SRP076846 SRR3707344 The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq)
10.0 3.2 3.1 SRP114806 SRR5894660 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.0 -3.2 -3.1 SRP101641 SRR5330614 Chloroplast signalling gates thermotolerance in Arabidopsis
Note: Samples whose contribution is more than 10 are outputted.



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