CoexViewer
Coexpression detail for EMB2719 and PAC1
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | EMB2719 | PAM domain (PCI/PINT associated module) protein | 838609 | At1g20200 | 0.9 | 12.50 | 11.52 | 10.11 | 8.20 | 4.60 | 3.31 | 2.12 | 3.96 | 4.17 | 5.72 | |
| ath | PAC1 | 20S proteasome alpha subunit C1 | 821774 | At3g22110 | 0.9 |
|
coex z = 11.5167 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 838609 (z-scored expression) |
821774 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 40.2 | -6.5 | -6.2 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 38.3 | -6.0 | -6.4 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 30.3 | -5.4 | -5.6 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 26.6 | -5.2 | -5.1 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 24.3 | 5.2 | 4.7 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 20.3 | 4.1 | 5.0 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 19.8 | -4.6 | -4.3 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 19.6 | -4.3 | -4.6 | SRP251062 | SRR11206305 | Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants |
| 16.7 | -4.3 | -3.9 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 16.7 | 4.1 | 4.0 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 16.5 | 3.5 | 4.7 | SRP266133 | SRR11934683 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 16.4 | 3.7 | 4.4 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 15.3 | -3.7 | -4.1 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 14.8 | 3.7 | 4.0 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.3 | 3.7 | 3.8 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 14.2 | -3.9 | -3.6 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 13.8 | 3.7 | 3.7 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.6 | 3.6 | 3.8 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 13.4 | -3.6 | -3.7 | SRP039091 | SRR1179986 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 13.2 | -3.6 | -3.7 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 13.1 | -3.7 | -3.5 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 13.0 | 3.3 | 3.9 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.8 | 3.6 | 3.6 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.8 | -3.3 | -3.9 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 12.7 | -3.6 | -3.5 | SRP279454 | SRR12554216 | RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis |
| 12.7 | 4.1 | 3.1 | SRP324081 | SRR14813597 | ARATH-IN-OUT |
| 12.7 | 4.1 | 3.1 | SRP362867 | SRR18254734 | Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses |
| 12.7 | -3.3 | -3.8 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.5 | 2.9 | 4.3 | SRP277946 | SRR12470185 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.5 | 3.4 | 3.7 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 12.4 | 3.4 | 3.7 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.4 | -3.1 | -4.0 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 12.3 | 3.6 | 3.4 | SRP277946 | SRR12470201 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.2 | -3.4 | -3.6 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 12.0 | -3.7 | -3.3 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 11.5 | -3.4 | -3.4 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 11.4 | 3.3 | 3.4 | SRP277946 | SRR12470194 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.2 | -3.3 | -3.4 | SRP297585 | SRR13239294 | mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos |
| 11.2 | -3.3 | -3.4 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 11.2 | -3.5 | -3.2 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 11.1 | -3.2 | -3.5 | SRP039091 | SRR1179987 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 11.1 | 3.5 | 3.2 | SRP285090 | SRR12697055 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 11.0 | -3.3 | -3.3 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.0 | 3.9 | 2.8 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 10.9 | -3.4 | -3.2 | SRP097877 | SRR5205677 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.9 | -3.2 | -3.4 | SRP337622 | SRR15931267 | Hydropriming: the plant endophyte Pseudomonas argenenensis SA190 induces drought tolerance in plants via reprograming aquaporin expression and water use efficiency |
| 10.8 | -3.3 | -3.3 | SRP101641 | SRR5330626 | Chloroplast signalling gates thermotolerance in Arabidopsis |
| 10.7 | 3.1 | 3.5 | SRP277946 | SRR12469632 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.7 | 3.1 | 3.5 | SRP277946 | SRR12470067 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.7 | 3.8 | 2.8 | SRP114806 | SRR5894659 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 10.5 | 2.7 | 3.9 | SRP103736 | SRR5440841 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 10.5 | 3.4 | 3.1 | SRP103736 | SRR5440785 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 10.5 | -3.1 | -3.4 | SRP173260 | SRR8310903 | Functional relationship of GUN1 and FUG1 in plastid proteostasis |
| 10.4 | -3.1 | -3.3 | SRP126872 | SRR6381398 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 10.3 | -2.7 | -3.8 | SRP103817 | SRR5444399 | Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana |
| 10.3 | -3.3 | -3.1 | SRP194106 | SRR8983768 | Arabidopsis thaliana 35S:ANT-GR Transcriptome |
| 10.3 | -3.6 | -2.9 | SRP285902 | SRR12747511 | Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis |
| 10.3 | 3.1 | 3.4 | SRP189792 | SRR8800692 | Role of AtMLKLs in response to powdery mildew fungus |
| 10.1 | -3.1 | -3.3 | SRP105346 | SRR5483624 | The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (RNA-Seq) |
| 10.1 | -3.2 | -3.1 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.0 | 3.0 | 3.4 | SRP277946 | SRR12470065 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.0 | -2.9 | -3.4 | SRP145580 | SRR7160920 | Gene expression responses to ABA and to osmotic stress in the pyl112458 379101112 mutant |
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