CoexViewer
Coexpression detail for EMB2719 and UBP6
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | EMB2719 | PAM domain (PCI/PINT associated module) protein | 838609 | At1g20200 | 0.9 | 9.54 | 8.51 | 8.00 | 16.20 | 3.06 | 2.63 | 2.46 | 3.95 | 2.42 | 9.84 | |
| ath | UBP6 | ubiquitin-specific protease 6 | 841596 | At1g51710 | 0.9 |
|
coex z = 8.5071 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 838609 (z-scored expression) |
841596 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 38.2 | -6.0 | -6.4 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 29.9 | -5.4 | -5.6 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 25.1 | 5.2 | 4.8 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 22.5 | -5.2 | -4.3 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 21.4 | -6.5 | -3.3 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 19.6 | -4.3 | -4.6 | SRP251062 | SRR11206305 | Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants |
| 19.4 | -4.6 | -4.3 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 18.2 | 3.9 | 4.7 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 18.1 | -4.3 | -4.2 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 16.0 | 4.1 | 3.9 | SRP324081 | SRR14813597 | ARATH-IN-OUT |
| 16.0 | 4.1 | 3.9 | SRP362867 | SRR18254734 | Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses |
| 15.9 | 4.1 | 3.8 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 15.8 | 4.1 | 3.9 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 15.6 | -3.5 | -4.5 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 15.3 | -3.9 | -3.9 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 14.9 | 3.7 | 4.0 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.3 | -3.7 | -3.8 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 13.8 | -3.6 | -3.8 | SRP039091 | SRR1179986 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 13.6 | 3.6 | 3.8 | SRP277946 | SRR12470201 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.4 | 3.5 | 3.8 | SRP266133 | SRR11934683 | Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions |
| 13.4 | 3.8 | 3.5 | SRP114806 | SRR5894659 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 13.4 | -3.4 | -3.9 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 13.3 | -3.7 | -3.6 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 13.1 | 3.7 | 3.5 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.0 | 3.6 | 3.6 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 12.7 | 3.6 | 3.5 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 12.6 | 3.5 | 3.6 | SRP285090 | SRR12697055 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 12.6 | -3.3 | -3.8 | SRP093913 | SRR5054306 | Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis |
| 12.6 | 3.7 | 3.4 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.4 | 3.4 | 3.6 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.3 | -3.4 | -3.7 | SRP097877 | SRR5205677 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 12.3 | -3.2 | -3.9 | SRP039091 | SRR1179987 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 12.2 | -3.1 | -3.9 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 12.0 | 3.4 | 3.5 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 11.9 | -3.3 | -3.6 | SRP066432 | SRR2925730 | Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor, MONGOOSE1 |
| 11.8 | 3.4 | 3.5 | SRP222258 | SRR15122126 | A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism |
| 11.8 | -3.3 | -3.6 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 11.8 | -3.1 | -3.8 | SRP258701 | SRR11614791 | Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence |
| 11.7 | -3.7 | -3.2 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 11.6 | 3.7 | 3.1 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 11.6 | -3.6 | -3.2 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 11.4 | -3.3 | -3.4 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.4 | 3.5 | 3.2 | SRP277946 | SRR12469638 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.3 | 3.3 | 3.4 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.3 | -3.6 | -3.1 | SRP279454 | SRR12554216 | RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis |
| 11.3 | 3.4 | 3.3 | SRP103736 | SRR5440785 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 11.1 | -3.4 | -3.2 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 10.7 | -3.3 | -3.3 | SRP194106 | SRR8983768 | Arabidopsis thaliana 35S:ANT-GR Transcriptome |
| 10.7 | 2.7 | 3.9 | SRP371011 | SRR18808229 | Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation |
| 10.7 | -2.9 | -3.6 | SRP102178 | SRR5360867 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.7 | -3.3 | -3.2 | SRP101641 | SRR5330626 | Chloroplast signalling gates thermotolerance in Arabidopsis |
| 10.7 | 3.3 | 3.2 | SRP277946 | SRR12470194 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.6 | -4.1 | -2.6 | SRP126574 | SRR6369407 | Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis |
| 10.6 | -2.8 | -3.8 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 10.5 | 3.0 | 3.5 | SRP277946 | SRR12470065 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.5 | -3.3 | -3.1 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.1 | -3.1 | -3.2 | SRP126872 | SRR6381398 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
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