CoexViewer
Coexpression detail for AT1G01760 and AT2G32415
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | AT1G01760 | denosine deaminases acting on tRNA | 839252 | At1g01760 | 0.2 | 5.38 | 3.00 | 6.30 | 67.10 | 1.70 | 2.23 | 1.85 | 2.51 | 1.45 | 3.06 | |
| ath | AT2G32415 | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein | 817803 | At2g32415 | 0.2 |
|
coex z = 3.0032 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 839252 (z-scored expression) |
817803 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 55.7 | -8.6 | -6.4 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 21.2 | -4.1 | -5.2 | SRP090459 | SRR4296043 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 20.5 | -5.1 | -4.0 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 18.3 | -3.8 | -4.9 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 18.2 | -4.4 | -4.1 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 16.5 | -4.3 | -3.8 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 16.1 | -3.6 | -4.4 | SRP155742 | SRR8699976 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 16.0 | -4.5 | -3.5 | SRP126156 | SRR6347981 | Equal parental contribution to the transcriptome is not equal control of embryogenesis |
| 15.9 | -3.8 | -4.2 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 15.4 | -5.4 | -2.8 | SRP163044 | SRR7947128 | Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA |
| 15.3 | -4.1 | -3.7 | SRP150217 | SRR7289570 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 13.6 | -3.8 | -3.6 | SRP297585 | SRR13239294 | mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos |
| 13.6 | -3.8 | -3.6 | SRP269252 | SRR12110257 | Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length |
| 13.4 | -4.5 | -3.0 | SRP091641 | SRR4426950 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 13.4 | -3.0 | -4.5 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 12.8 | -2.9 | -4.4 | SRP165731 | SRR8054398 | The embryonic transcriptome of Arabidopsis thaliana |
| 12.7 | -3.6 | -3.5 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 12.6 | 3.8 | 3.3 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 12.5 | -4.3 | -2.9 | SRP214585 | SRR9681600 | Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins |
| 12.3 | -3.0 | -4.1 | SRP272650 | SRR12272429 | Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity |
| 12.2 | -3.3 | -3.7 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.2 | -3.4 | -3.6 | SRP163443 | SRR8060876 | RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration |
| 12.2 | -4.8 | -2.6 | SRP126872 | SRR6381404 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 12.1 | -3.0 | -4.1 | SRP285090 | SRR12697085 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 11.9 | -4.5 | -2.6 | SRP091641 | SRR4426959 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 11.9 | -2.8 | -4.3 | SRP267137 | SRR12005766 | ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks |
| 11.3 | -4.5 | -2.5 | SRP091641 | SRR4426353 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 11.3 | -4.3 | -2.6 | ERP116123 | ERR3414642 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 11.1 | -3.4 | -3.3 | SRP073485 | SRR3401786 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 11.0 | 3.1 | 3.5 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 10.9 | -1.7 | -6.3 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 10.8 | -4.6 | -2.3 | SRP257480 | SRR11573268 | Relevance of Unfolded Protein Response to Spaceflight-Induced Transcriptional Reprogramming in Arabidopsis |
| 10.7 | -4.5 | -2.4 | SRP091641 | SRR4426364 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 10.7 | -3.1 | -3.4 | SRP093913 | SRR5054306 | Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis |
| 10.7 | -3.3 | -3.2 | SRP197319 | SRR9034734 | Hypoxic gene expression in med25-1 |
| 10.5 | -3.5 | -3.0 | SRP119072 | SRR6113964 | Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana |
| 10.5 | 3.1 | 3.3 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.3 | 3.0 | 3.4 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 10.2 | 2.9 | 3.5 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.1 | -2.6 | -3.9 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 10.1 | -3.7 | -2.8 | SRP156316 | SRR7642979 | From gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots. |
| 10.1 | -2.7 | -3.7 | SRP158306 | SRR7695066 | Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
| 10.1 | -4.1 | -2.5 | ERP013651 | ERR1194830 | Transcriptional response of Arabidopsis thaliana in systemic acquired resistance: critical roles for pipecolic acid and salicylic acid |
The preparation time of this page was 0.9 [sec].
