CoexViewer

Coexpression detail for AT1G01980 and AT3G01240
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT1G01980 FAD-binding Berberine family protein 839296 At1g01980 0.01 8.99 5.56 9.97 39.20 2.92 1.32 2.01 1.13 1.40 4.07
ath AT3G01240 splicing regulatory glutamine/lysine-rich-like protein 821219 At3g01240 0.01
Platform:

coex z = 5.5639



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 839296
(z-scored expression)		 821219
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
57.8 9.9 5.8 SRP100938 SRR5304458 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
36.2 2.5 14.7 SRP277946 SRR12469770 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
35.1 6.4 5.5 SRP100712 SRR5285558 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
30.6 5.6 5.4 SRP154321 SRR7536092 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
30.6 5.6 5.4 SRP154321 SRR7536081 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
26.8 4.2 6.4 SRP326522 SRR15015712 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
25.8 4.3 6.0 SRP285380 SRR12712268 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
22.4 3.0 7.4 SRP254177 SRR11429296 Time course of brassinolide treatment on Arabidopsis seedlings
22.3 4.3 5.2 SRP112501 SRR5831030 Combining chemical and genetic approaches to increase drought resistance in plants
21.3 5.7 3.8 SRP214325 SRR9672835 Temporal comparison of leaf transcriptomes between early-flowering Arabidopsis thaliana atx1/atx3/atx4 triple mutants and vegetative WT Col-0 plants of the same age.
20.4 3.8 5.4 SRP153425 SRR7521813 Phytochrome B-SPA-COP1 regulation of red light induced gene expressions in Arabidopsis thaliana
20.4 4.4 4.7 SRP100933 SRR5304253 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
20.0 6.2 3.2 SRP100064 SRR5262964 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
18.8 4.2 4.4 SRP093765 SRR5045288 Transcriptome analysis after IAA paste application on pin1 mutant inflorescence meristems
18.6 6.2 3.0 SRP100064 SRR5262970 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
18.6 6.2 3.0 SRP100064 SRR5263117 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
18.0 4.2 4.3 SRP334993 SRR15679178 Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes
17.4 3.9 4.4 SRP161596 SRR7822644 Identification of regulators of vascular proliferation
17.3 1.9 9.3 SRP150217 SRR7289514 Widespread inter-individual gene expression variability in Arabidopsis thaliana
17.1 4.0 4.3 SRP154323 SRR7536181 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
17.1 4.2 4.1 SRP149670 SRR7252677 Effect of GA on PAC and PAO1 treated Arabidopsis seeds
16.8 4.1 4.1 SRP161596 SRR7822643 Identification of regulators of vascular proliferation
16.6 3.4 4.9 SRP127000 SRR7750510 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0) and 1 day after culture (DAC) from 9-day-old, 12-day-old and 15-day-old Col-0 seedlings
16.1 2.3 6.9 SRP357889 SRR17847283 Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
15.6 3.6 4.3 SRP095390 SRR5121380 Induced one gene overexpression and check the transcriptional expression
14.8 2.9 5.0 SRP201662 SRR9312934 Tissue specific light response during Arabidopsis de-etiolation
14.4 4.9 2.9 SRP126574 SRR6369468 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
14.3 1.5 9.5 SRP285119 SRR12698785 Time of day prioritizes the pool of translating mRNAs in response to heat stress
14.1 3.2 4.4 SRP277943 SRR12469342 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST]
14.1 3.5 4.1 ERP118500 ERR3668659 Transcription profiling of Arabidopsis thaliana leaves as reaction to caterpillar (Trichoplusia ni) feeding and fungi (Laccaria bicolor) infection of the roots
14.1 -3.5 -4.0 SRP378009 SRR19505573 Transcriptional Reprogramming during Floral Fate Acquisition III
14.0 2.5 5.6 SRP098906 SRR5231015 The PIF4 controlled auxin pathway contributes to hybrid vigor in Arabidopsis thaliana
13.2 2.6 5.2 SRP150771 SRR7357983 RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
13.1 2.1 6.3 SRP136269 SRR6880738 Cold priming and triggering of Arabidopsis accessions
13.0 2.1 6.1 SRP158306 SRR7695006 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
13.0 4.9 2.7 SRP291160 SRR12980999 Transcriptomic responses of Arabidopsis thaliana lines WS and sku5 to the Blue Origin NS-12 and Virgin Galactic VP-03 suborbital flights
12.8 4.4 2.9 SRP193460 SRR8944875 Selective egg cell polyspermy bypasses the triploid block
12.7 2.4 5.2 SRP288586 SRR12898869 Transcriptional response of A. thaliana Root and Shoot tissue to light stress and presence of microbial communities
12.5 2.4 5.2 SRP297574 SRR13238903 mRNA profiling of Trihelix transcription factor ASIL mutants in seedlings
12.5 3.4 3.7 SRP238842 SRR10769010 Next Generation Sequencing Facilitates Quantitative Analysis of in 14-day-old wt, brm-1, brm-3, brip1, brip2, brip1 brip2, brip1 brip2 brm-3 and brip1 brip2 brm-1 seedlings.
12.3 2.3 5.5 SRP074485 SRR3480174 Spatiotemporal analysis of shade-induced transcriptional reprogramming in Arabidopsis reveals patterns underlying organ-specific growth
12.1 6.2 1.9 SRP100064 SRR5263135 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
11.6 2.4 4.9 ERP119429 ERR3821794 Transcription profiling of Arabidopsis thaliana root parts in reaction to fungal (Laccaria bicolor) volatiles
11.1 2.8 3.9 SRP163044 SRR7947120 Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
10.7 2.2 4.8 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
10.4 2.7 3.8 SRP163044 SRR7947122 Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
10.2 3.0 3.4 ERP105389 ERR2204426 Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid
Note: Samples whose contribution is more than 10 are outputted.



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