CoexViewer

Coexpression detail for AT1G01980 and RALFL26
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT1G01980 FAD-binding Berberine family protein 839296 At1g01980 0.01 9.25 8.01 7.99 1235.00 4.12 0.37 0.64 1.24 1.37 1.09
ath RALFL26 ralf-like 26 822109 At3g25170 0.01
Platform:

coex z = 8.0082



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 839296
(z-scored expression)		 822109
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
121.3 9.9 12.3 SRP100938 SRR5304458 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
98.5 6.2 15.8 SRP100064 SRR5262970 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
86.3 6.4 13.4 SRP100712 SRR5285558 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
47.0 4.4 10.7 SRP193460 SRR8944875 Selective egg cell polyspermy bypasses the triploid block
43.0 2.4 17.6 SRP266133 SRR11934447 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
40.7 5.9 6.9 SRP154323 SRR7536242 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
39.1 4.3 9.1 SRP285380 SRR12712268 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
38.3 4.2 9.2 SRP334993 SRR15679178 Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes
33.6 4.2 8.0 SRP326522 SRR15015712 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
33.0 3.1 10.5 ERP116123 ERR3414683 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
30.6 2.7 11.2 SRP158306 SRR7695100 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
30.6 2.7 11.2 SRP158306 SRR7695110 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
28.9 4.2 6.8 SRP093765 SRR5045288 Transcriptome analysis after IAA paste application on pin1 mutant inflorescence meristems
26.9 4.3 6.2 SRP112501 SRR5831030 Combining chemical and genetic approaches to increase drought resistance in plants
26.8 1.9 14.3 SRP097877 SRR5205806 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
26.2 4.2 6.3 SRP149670 SRR7252677 Effect of GA on PAC and PAO1 treated Arabidopsis seeds
23.8 2.1 11.2 SRP158306 SRR7695062 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
23.8 2.1 11.2 SRP158306 SRR7695158 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
20.6 3.4 6.1 SRP238842 SRR10769010 Next Generation Sequencing Facilitates Quantitative Analysis of in 14-day-old wt, brm-1, brm-3, brip1, brip2, brip1 brip2, brip1 brip2 brm-3 and brip1 brip2 brm-1 seedlings.
19.6 3.4 5.8 SRP127000 SRR7750510 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0) and 1 day after culture (DAC) from 9-day-old, 12-day-old and 15-day-old Col-0 seedlings
19.3 3.3 5.8 SRP109649 SRR5712368 Transcriptome profiling of mutants of CALMODULIN-LIKE (CML) family genes and CALMODULIN-BINDING PROTEIN 60 (CBP60) family genes in response to Pseudomonas syringae pv maculicola ES4326
19.2 4.1 4.7 SRP161596 SRR7822643 Identification of regulators of vascular proliferation
18.5 3.9 4.7 SRP161596 SRR7822644 Identification of regulators of vascular proliferation
18.4 3.6 5.1 SRP095390 SRR5121380 Induced one gene overexpression and check the transcriptional expression
18.1 2.4 7.6 SRP324081 SRR14813597 ARATH-IN-OUT
18.1 2.4 7.6 SRP362867 SRR18254734 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
18.0 3.2 5.7 SRP199288 SRR9113155 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
16.7 -3.5 -4.7 SRP378009 SRR19505573 Transcriptional Reprogramming during Floral Fate Acquisition III
16.2 2.9 5.5 SRP201662 SRR9312934 Tissue specific light response during Arabidopsis de-etiolation
16.1 2.6 6.2 SRP187719 SRR8689396 Transcriptomic analysis of pip5k1 pip5k2 mutant and wild type plants before or after inoculation with powdery mildew Erysiphe cichoracearum
15.8 3.3 4.8 SRP233656 SRR10555767 Arabidopsis QUANTIREX
15.8 2.2 7.2 SRP297920 SRR13253058 Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
15.0 3.3 4.6 SRP254994 SRR11470432 Transcriptome analysis of mutations in plant nuclear membrane proteins PNET2A/B/C
14.6 3.5 4.2 ERP118500 ERR3668659 Transcription profiling of Arabidopsis thaliana leaves as reaction to caterpillar (Trichoplusia ni) feeding and fungi (Laccaria bicolor) infection of the roots
14.5 2.4 6.0 SRP286312 SRR12770106 HEC regulation at high ambient temperature gene expression in Arabidopsis thaliana
14.2 2.5 5.8 ERP118109 ERR3624494 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
14.0 1.8 7.9 SRP257480 SRR11573303 Relevance of Unfolded Protein Response to Spaceflight-Induced Transcriptional Reprogramming in Arabidopsis
13.1 2.8 4.6 SRP163044 SRR7947120 Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
13.0 2.9 4.5 ERP122723 ERR4318771 RNA-seq of Arabidopsis thaliana leaves for three genotypes (Col-0 wild type, gsnor1-3, axe1-5/hda6) in low light and dark conditions
12.8 2.5 5.2 SRP073003 SRR3347450 Gene expression analysis (RNA-seq) of Arabidopsis thaliana roots in wild type and trm4b-1 mutants under control and oxidative stress conditions
12.4 2.2 5.7 SRP306740 SRR13724696 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_16]
12.4 2.8 4.3 SRP065316 SRR2828728 Correlative Controls of Seeds over Maternal Growth and Senescence in Arabidopsis
12.3 2.7 4.6 SRP163044 SRR7947122 Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
12.2 3.2 3.9 SRP047297 SRR1578858 Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana
12.2 2.1 5.7 SRP074436 SRR3478303 Arabidopsis thaliana treatments to trigger somatic embryo formation under RNAseq
12.0 2.8 4.3 SRP056607 SRR1942856 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
12.0 2.0 6.0 SRP151817 SRR7465435 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
11.8 2.0 5.8 SRP165975 SRR8069366 High temperature transcriptomes of mutants in HDA9, PIF4 and Col-0 wild type of young Arabidopsis seedlings
11.8 2.1 5.5 SRP186254 SRR8590833 Arabidopsis ECAP is a New Adaptor Protein that Connects JAZ Repressors with TPR2 Co-repressor to Suppress Jasmonate-Responsive Anthocyanin Accumulation
11.5 1.9 6.0 SRP073379 SRR3393578 Arabidopsis BIC1 inactivates CRY2 by suppressing the blue light-dependent cryptochrome dimerization
11.3 2.7 4.1 SRP302122 SRR13450911 The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq]
11.3 2.6 4.3 SRP063017 SRR2221852 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
11.3 1.6 7.3 SRP242317 SRR10905201 The characterization of Mediator12 and 13 as conditional positive gene regulators in Arabidopsis [RNA-seq]
11.2 2.9 3.9 SRP112501 SRR5831031 Combining chemical and genetic approaches to increase drought resistance in plants
10.9 3.2 3.4 SRP151348 SRR7429894 Transcriptome analysis of EDS1-R493A after Pst AvrRps4- triggered immunity
10.8 2.5 4.4 ERP118109 ERR3624358 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
10.7 1.4 7.5 SRP083970 SRR4115325 The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
10.6 3.2 3.3 ERP023227 ERR1990461 Establishment of photosynthesis through chloroplast development is controlled by two distinct regulatory phases
10.6 1.9 5.7 SRP081055 SRR4010838 Temperature induced alternative splicing is affected in sdg8 and sdg26.
10.5 2.7 3.9 SRP105272 SRR5482528 Cell type transcriptomic profile of the Arabidopsis root stem cell niche
10.5 2.1 5.0 SRP151039 SRR7406461 transition-Transcriptome of floral transition
10.3 2.6 4.0 SRP058628 SRR2037347 Transcriptome profiles and comparison of Arabidopsis thaliana woody (soc1-ful) and WT (Col-0) stems.
10.2 2.5 4.1 SRP103816 SRR5444355 Tobacco mosaic virus infection alters phloem associated translatomes in Arabidopsis thaliana
10.2 1.7 5.8 SRP267375 SRR12017005 Deconvoluting ACS1 retrograde signaling networks that regulate leaf development
10.0 1.3 7.5 SRP083970 SRR4115326 The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
Note: Samples whose contribution is more than 10 are outputted.



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