CoexViewer

Coexpression detail for AT1G01980 and AT3G62710
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT1G01980 FAD-binding Berberine family protein 839296 At1g01980 0.01 9.40 7.68 8.58 17.30 3.57 3.11 1.80 2.07 1.44 4.32
ath AT3G62710 Glycosyl hydrolase family protein 825445 At3g62710 0.01
Platform:

coex z = 7.6757



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 839296
(z-scored expression)		 825445
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
65.7 3.3 20.0 SRP277946 SRR12470101 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
57.4 4.5 12.7 SRP091641 SRR4426365 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
44.8 2.7 16.3 SRP158306 SRR7695152 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
43.8 3.5 12.7 SRP091641 SRR4449307 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
34.9 2.1 16.3 SRP158306 SRR7694862 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
28.8 4.2 6.9 SRP326522 SRR15015712 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
27.7 2.5 11.3 SRP277946 SRR12470071 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
26.7 4.0 6.7 SRP154323 SRR7536181 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
26.5 4.3 6.2 SRP285380 SRR12712268 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
26.4 3.2 8.2 SRP277943 SRR12469311 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST]
25.3 5.7 4.5 SRP214325 SRR9672835 Temporal comparison of leaf transcriptomes between early-flowering Arabidopsis thaliana atx1/atx3/atx4 triple mutants and vegetative WT Col-0 plants of the same age.
23.7 1.9 12.7 SRP150217 SRR7289514 Widespread inter-individual gene expression variability in Arabidopsis thaliana
23.6 4.5 5.3 SRP090459 SRR4296032 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
22.5 3.1 7.2 SRP282437 SRR12642157 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
21.8 3.8 5.8 SRP153425 SRR7521813 Phytochrome B-SPA-COP1 regulation of red light induced gene expressions in Arabidopsis thaliana
21.7 4.1 5.3 SRP161596 SRR7822643 Identification of regulators of vascular proliferation
20.8 4.3 4.8 SRP112501 SRR5831030 Combining chemical and genetic approaches to increase drought resistance in plants
19.8 4.2 4.7 SRP093765 SRR5045288 Transcriptome analysis after IAA paste application on pin1 mutant inflorescence meristems
19.6 2.1 9.4 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
19.4 3.9 5.0 SRP161596 SRR7822644 Identification of regulators of vascular proliferation
18.8 4.2 4.5 SRP149670 SRR7252677 Effect of GA on PAC and PAO1 treated Arabidopsis seeds
17.9 4.0 4.5 SRP154323 SRR7536228 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
17.1 4.0 4.2 SRP310860 SRR13977109 Spider mite egg extract modifies Arabidopsis response to future infestations
16.6 3.0 5.5 SRP324081 SRR14813598 ARATH-IN-OUT
16.6 3.0 5.5 SRP362867 SRR18254733 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
16.5 2.5 6.6 SRP098906 SRR5231015 The PIF4 controlled auxin pathway contributes to hybrid vigor in Arabidopsis thaliana
16.4 4.2 4.0 SRP334993 SRR15679178 Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes
16.3 2.9 5.5 SRP201662 SRR9312934 Tissue specific light response during Arabidopsis de-etiolation
16.2 3.6 4.5 SRP095390 SRR5121380 Induced one gene overexpression and check the transcriptional expression
15.5 3.5 4.4 SRP258689 SRR11614725 Prediction of Auxin-Ethylene Crosstalk Mediators Using Meta-Analysis of Hormone-Induced Transcriptome Data in Arabidopsis
15.4 2.7 5.8 SRP068652 SRR3109693 SHORT-ROOT Deficiency Alleviates the Cell Death Phenotype of the Arabidopsis catalase2 Mutant under Photorespiration-Promoting Conditions
14.7 -3.5 -4.2 SRP378009 SRR19505573 Transcriptional Reprogramming during Floral Fate Acquisition III
13.7 3.0 4.5 SRP272650 SRR12272455 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
13.6 2.2 6.1 SRP081056 SRR4010848 Temperature induced changes in the Arabidopsis transcriptome
13.5 2.0 6.8 SRP154099 SRR7529157 Transcriptome analysis of Arabidopsis thaliana photoreceptor mutants impaired in UV and blue light signaling
13.5 3.2 4.2 SRP199288 SRR9113155 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
13.3 3.4 3.9 SRP238842 SRR10769010 Next Generation Sequencing Facilitates Quantitative Analysis of in 14-day-old wt, brm-1, brm-3, brip1, brip2, brip1 brip2, brip1 brip2 brm-3 and brip1 brip2 brm-1 seedlings.
13.0 3.0 4.3 ERP105389 ERR2204426 Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid
12.8 3.3 3.9 ERP118109 ERR3624399 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
12.8 2.8 4.5 SRP163044 SRR7947120 Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
12.7 2.8 4.5 SRP056607 SRR1942855 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
12.7 2.7 4.7 SRP253504 SRR11359545 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
12.6 2.0 6.3 SRP238608 SRR10760432 Gene expression profiling (RNA-seq) in wild-type Arabidopsis seedlings in response to heat acclimation and heat shock
12.4 3.5 3.6 ERP118500 ERR3668659 Transcription profiling of Arabidopsis thaliana leaves as reaction to caterpillar (Trichoplusia ni) feeding and fungi (Laccaria bicolor) infection of the roots
12.2 2.4 5.0 SRP297574 SRR13238903 mRNA profiling of Trihelix transcription factor ASIL mutants in seedlings
12.1 2.4 5.1 SRP285090 SRR12697085 Differential alteration of plant functions by homologous fungal candidate effectors
12.0 2.2 5.5 SRP301115 SRR13397342 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
11.5 2.7 4.3 SRP163044 SRR7947122 Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
11.4 3.3 3.5 SRP351690 SRR17281225 Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time [RNA-seq]
11.3 2.8 4.0 SRP065316 SRR2828728 Correlative Controls of Seeds over Maternal Growth and Senescence in Arabidopsis
11.3 2.5 4.6 SRP073003 SRR3347450 Gene expression analysis (RNA-seq) of Arabidopsis thaliana roots in wild type and trm4b-1 mutants under control and oxidative stress conditions
11.1 3.3 3.4 ERP118109 ERR3624451 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
10.9 2.7 4.1 SRP105272 SRR5482528 Cell type transcriptomic profile of the Arabidopsis root stem cell niche
10.9 2.3 4.8 SRP279992 SRR12582701 Gene expression responses to ABA and to osmotic stress in the bon123 triple mutant
10.8 2.8 3.9 SRP056607 SRR1942856 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
10.6 2.5 4.3 ERP118109 ERR3624495 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
10.5 2.9 3.7 SRP112501 SRR5831031 Combining chemical and genetic approaches to increase drought resistance in plants
10.5 2.3 4.5 SRP163134 SRR7954867 Transcriptional charecterization of the eds4 mutant transcriptome
10.5 2.6 4.0 SRP063017 SRR2221852 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
10.4 3.1 3.3 SRP237340 SRR10677224 MYB30 orchestras ROS wave-triggered systemic transcriptomic responses and plant acclimation in Arabidopsis
10.4 -2.9 -3.6 SRP378012 SRR19505666 Transcriptional Reprogramming during Floral Fate Acquisition I
10.2 2.2 4.6 SRP306740 SRR13724696 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_16]
10.1 1.5 6.7 SRP285119 SRR12698779 Time of day prioritizes the pool of translating mRNAs in response to heat stress
10.1 1.5 6.7 SRP285119 SRR12698846 Time of day prioritizes the pool of translating mRNAs in response to heat stress
10.1 3.1 3.2 SRP017386 SRR627657 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
Note: Samples whose contribution is more than 10 are outputted.



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