CoexViewer
Coexpression detail for AT1G29310 and ATERDJ3B
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | AT1G29310 | SecY protein transport family protein | 839805 | At1g29310 | 0.78 | 12.88 | 10.84 | 11.44 | 7.50 | 2.90 | 3.75 | 3.98 | 4.92 | 2.84 | 4.60 | |
| ath | ATERDJ3B | DNAJ heat shock family protein | 825434 | At3g62600 | 0.78 |
|
coex z = 10.835 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 839805 (z-scored expression) |
825434 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 27.7 | -5.2 | -5.4 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 22.0 | -5.4 | -4.1 | ERP123539 | ERR4471735 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 22.0 | -5.4 | -4.1 | ERP123539 | ERR4471734 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 20.9 | -6.2 | -3.4 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 20.4 | -4.6 | -4.4 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 20.4 | 4.4 | 4.6 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 17.7 | -4.2 | -4.2 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 16.6 | -4.1 | -4.1 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 16.1 | -4.0 | -4.1 | ERP123539 | ERR4471736 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 16.1 | -4.0 | -4.1 | ERP123539 | ERR4471737 | EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes |
| 15.7 | -3.4 | -4.6 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 15.4 | 3.5 | 4.4 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 15.2 | -3.7 | -4.1 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 14.6 | -3.9 | -3.7 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 14.5 | -4.2 | -3.5 | SRP339340 | SRR16119309 | Single seeds exhibit transcriptional heterogeneity during secondary dormancy induction |
| 14.2 | -3.6 | -4.0 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.5 | 3.1 | 4.1 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 12.4 | -3.4 | -3.7 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 12.0 | -3.1 | -3.8 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 11.9 | 3.6 | 3.3 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 11.9 | -3.8 | -3.1 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 11.7 | -3.4 | -3.4 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 11.6 | 3.2 | 3.7 | SRP095347 | SRR5120428 | Genetic influences on gene expression in Arabidopsis thaliana |
| 11.3 | 3.5 | 3.3 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.3 | 3.3 | 3.4 | SRP114806 | SRR5894659 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 11.2 | -3.6 | -3.1 | SRP039091 | SRR1179987 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 11.1 | 3.6 | 3.1 | SRP103736 | SRR5440841 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 11.1 | 3.5 | 3.2 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.0 | -4.1 | -2.7 | ERP115370 | ERR3333441 | Arabidopsis tissue atlas |
| 11.0 | 3.0 | 3.7 | SRP277946 | SRR12469638 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.9 | -3.2 | -3.3 | SRP073487 | SRR3401835 | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
| 10.8 | 3.3 | 3.3 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 10.8 | -3.8 | -2.8 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 10.7 | -3.2 | -3.3 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.5 | -3.5 | -3.0 | ERP115370 | ERR3333442 | Arabidopsis tissue atlas |
| 10.4 | -3.7 | -2.8 | SRP170953 | SRR8249036 | Gene Expression Atlas of Embryo Development in Arabidopsis |
| 10.4 | 3.2 | 3.3 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.4 | -2.8 | -3.7 | SRP039091 | SRR1179986 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 10.4 | 3.3 | 3.2 | SRP044776 | SRR1523921 | High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade |
| 10.3 | -3.0 | -3.5 | SRP136326 | SRR6941655 | Knock-down of phosphoserine phosphatase gene effects rather N- than S-metabolism in Arabidopsis thaliana |
| 10.3 | 3.4 | 3.0 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 10.2 | -3.7 | -2.8 | SRP114806 | SRR5894454 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 10.0 | 3.3 | 3.1 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.0 | 3.0 | 3.4 | SRP277946 | SRR12470200 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
The preparation time of this page was 2.6 [sec].
