CoexViewer

Coexpression detail for ROPGEF14 and AT1G29530
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath ROPGEF14 RHO guanyl-nucleotide exchange factor 14 840052 At1g31650 0.63 5.12 5.40 3.46 205.30 1.04 2.30 0.84 2.12 1.71 4.90
ath AT1G29530 uncharacterized protein 839830 At1g29530 0.63
Platform:

coex z = 5.3976



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 840052
(z-scored expression)		 839830
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
37.4 -6.4 -5.9 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
25.8 -5.2 -4.9 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
21.8 -4.1 -5.3 ERP115370 ERR3333443 Arabidopsis tissue atlas
20.8 -4.9 -4.3 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
20.3 4.3 4.7 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
19.1 -4.0 -4.7 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
19.1 -4.0 -4.7 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
18.7 -6.3 -3.0 SRP267137 SRR12005730 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
18.5 -3.9 -4.8 SRP100064 SRR5263007 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
17.3 4.1 4.3 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
17.1 -4.3 -4.0 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
16.9 4.1 4.1 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
15.7 -3.9 -4.0 SRP274404 SRR12356829 Exchange of molecular and cellular information: a hybrid model that integrates stem cell divisions and key regulatory interactions [w5C6]
15.5 3.9 4.0 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
15.4 -4.1 -3.8 SRP157719 SRR7688898 Metabolic labeling of RNAs uncovers hidden features and dynamics of the Arabidopsis thaliana transcriptome [ERIC]
15.2 -3.7 -4.1 ERP106238 ERR2245583 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
15.2 -3.6 -4.2 ERP116123 ERR3414875 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
14.6 -3.9 -3.7 SRP073485 SRR3401786 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
13.9 -3.5 -4.0 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
13.8 -4.2 -3.2 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
13.0 -3.4 -3.8 SRP091641 SRR4426344 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.7 -3.6 -3.5 SRP165731 SRR8054398 The embryonic transcriptome of Arabidopsis thaliana
12.7 -3.6 -3.5 SRP165731 SRR8054399 The embryonic transcriptome of Arabidopsis thaliana
12.7 -3.3 -3.8 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
12.5 -3.7 -3.4 SRP091641 SRR4426364 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.3 -3.3 -3.7 SRP100064 SRR5263009 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
12.2 3.5 3.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.2 -3.7 -3.3 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
12.0 3.5 3.4 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
12.0 -4.1 -2.9 SRP091641 SRR4426959 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
11.9 -3.3 -3.7 SRP159259 SRR7774155 Diel and circadian gating of Arabidopsis thermotolerance and transcriptional response to heat stress.
11.8 -4.2 -2.8 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
11.7 -3.1 -3.8 SRP103817 SRR5444479 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
11.6 -3.6 -3.2 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
11.5 -3.4 -3.4 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.5 3.3 3.5 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.5 3.6 3.2 SRP277946 SRR12470200 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.4 -3.4 -3.3 SRP187156 SRR8648403 Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection
11.4 -3.4 -3.3 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.3 3.8 3.0 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
11.1 3.5 3.2 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
11.0 -3.2 -3.4 SRP091641 SRR4426346 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.8 -3.4 -3.2 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
10.7 3.3 3.2 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
10.7 -3.7 -2.9 SRP091641 SRR4426947 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.6 3.3 3.2 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.6 2.7 4.0 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.5 3.3 3.2 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -3.3 -3.2 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.4 -3.8 -2.7 SRP166137 SRR8078941 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
10.4 3.7 2.8 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
10.4 -3.1 -3.4 ERP109739 ERR2683774 Transcriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway
10.4 -3.1 -3.4 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
10.3 -3.1 -3.4 SRP257291 SRR11568018 Gene expression in Arabidopsis expressing a Hyaloperonospora arabidopsidis effector
10.2 3.3 3.1 SRP277946 SRR12470187 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.2 -2.8 -3.7 SRP101641 SRR5330623 Chloroplast signalling gates thermotolerance in Arabidopsis
10.2 -3.2 -3.1 SRP047525 SRR1586505 Transcriptome profiling of DCP5 using strand-specific RNA-sequencing in Arabidopsis
10.1 3.0 3.4 SRP277946 SRR12470065 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 -3.4 -2.9 SRP269252 SRR12110257 Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length
10.0 -1.5 -6.7 SRP101274 SRR5308829 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
Note: Samples whose contribution is more than 10 are outputted.



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