CoexViewer
Coexpression detail for LDL1 and AT1G27690
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | LDL1 | LSD1-like 1 | 842582 | At1g62830 | 0.53 | 5.25 | 5.46 | 3.61 | 46.50 | 2.53 | 4.01 | 1.51 | 4.19 | 1.25 | 2.45 | |
| ath | AT1G27690 | lipase, putative (DUF620) | 839661 | At1g27690 | 0.53 |
|
coex z = 5.4642 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 842582 (z-scored expression) |
839661 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 40.2 | -6.7 | -6.0 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 30.3 | -4.7 | -6.4 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 27.3 | -4.8 | -5.7 | SRP285380 | SRR12712240 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 24.8 | -4.5 | -5.5 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 24.1 | -4.7 | -5.1 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 17.6 | -4.0 | -4.3 | SRP165731 | SRR8054398 | The embryonic transcriptome of Arabidopsis thaliana |
| 17.5 | -4.9 | -3.6 | SRP091641 | SRR4426959 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 16.4 | 3.6 | 4.5 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 16.4 | -4.0 | -4.1 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 16.3 | 4.4 | 3.7 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 15.6 | -3.9 | -4.0 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 15.1 | 3.9 | 3.9 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 14.7 | -3.8 | -3.8 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 13.4 | -4.8 | -2.8 | SRP285380 | SRR12712238 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 13.4 | 3.4 | 4.0 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.4 | 3.5 | 3.8 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 13.1 | -3.2 | -4.0 | ERP118109 | ERR3624433 | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
| 13.0 | -3.6 | -3.6 | SRP150217 | SRR7289570 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.9 | -3.1 | -4.2 | SRP070918 | SRR3193309 | Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2. |
| 12.7 | -3.4 | -3.7 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.6 | -4.0 | -3.2 | SRP091641 | SRR4426949 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 12.4 | -3.3 | -3.8 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 12.4 | 3.4 | 3.6 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.0 | -3.9 | -3.1 | ERP116123 | ERR3414875 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 12.0 | -3.6 | -3.3 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 11.8 | 3.1 | 3.9 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 11.8 | 3.4 | 3.4 | SRP189792 | SRR8800692 | Role of AtMLKLs in response to powdery mildew fungus |
| 11.7 | 3.3 | 3.5 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 11.6 | -2.7 | -4.3 | SRP361288 | SRR18124836 | Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory |
| 11.6 | -2.9 | -3.9 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 11.5 | -3.4 | -3.4 | SRP269252 | SRR12110257 | Maternally expressed imprinted gene SDC modulates circadian period and hypocotyl length |
| 11.5 | 3.2 | 3.6 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.5 | -3.4 | -3.4 | SRP126872 | SRR6381398 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 11.5 | -3.6 | -3.2 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 11.5 | -3.6 | -3.2 | SRP229078 | SRR10416643 | Global transcriptomic analysis of Arabidopsis thaliana ecotype Columbia-0 subjected to magnesium deficiency |
| 11.4 | -3.3 | -3.5 | ERP116123 | ERR3414642 | Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress |
| 11.1 | 3.4 | 3.3 | SRP365283 | SRR18430906 | Time-series RNAseq analysis following lateral root induction by gravistimulation |
| 11.1 | -3.6 | -3.1 | SRP145580 | SRR7160920 | Gene expression responses to ABA and to osmotic stress in the pyl112458 379101112 mutant |
| 11.0 | -3.2 | -3.5 | SRP073485 | SRR3401789 | Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation |
| 11.0 | -4.2 | -2.6 | SRP103736 | SRR5440882 | Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
| 10.7 | -3.5 | -3.1 | SRP214585 | SRR9681415 | Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins |
| 10.7 | -3.2 | -3.4 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 10.7 | -3.8 | -2.8 | SRP104760 | SRR5467210 | Interactions between effector-triggered immunity (ETI) and pattern-triggered immunity (PTI) in an Arabidopsis dde2 ein2 pad4 sid2 mutant |
| 10.7 | -3.1 | -3.4 | SRP097877 | SRR5205781 | An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 10.7 | -3.3 | -3.3 | SRP150217 | SRR7289598 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.6 | -3.9 | -2.7 | SRP285902 | SRR12747502 | Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis |
| 10.6 | 3.3 | 3.2 | SRP277946 | SRR12470194 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.5 | -3.0 | -3.5 | SRP117360 | SRR6030903 | The Arabidopsis transcription factor TCP5 during petal and inflorescence development |
| 10.5 | -3.0 | -3.5 | SRP039091 | SRR1179986 | Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource |
| 10.5 | 3.3 | 3.2 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 10.3 | -3.2 | -3.2 | SRP163443 | SRR8060876 | RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration |
| 10.2 | -3.5 | -2.9 | SRP114806 | SRR5894632 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 10.2 | -3.0 | -3.4 | SRP126872 | SRR6381405 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 10.1 | -3.2 | -3.2 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 10.0 | -3.0 | -3.3 | SRP126872 | SRR6381404 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
The preparation time of this page was 0.8 [sec].
