CoexViewer

Coexpression detail for LINC1 and DOT2
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath LINC1 little nuclei1 843043 At1g67230 0.95 7.41 8.39 4.43 54.50 0.11 1.53 2.44 1.66 0.35 3.80
ath DOT2 SART-1 family 831541 At5g16780 0.95
Platform:

coex z = 8.3907



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 843043
(z-scored expression)		 831541
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
49.0 -7.0 -7.0 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
38.0 -6.0 -6.4 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
33.8 5.7 5.9 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
33.7 -5.8 -5.8 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
29.5 -5.6 -5.3 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
21.2 4.6 4.6 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
19.6 -4.5 -4.4 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
19.1 -4.2 -4.5 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
18.5 4.4 4.2 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
18.5 -4.2 -4.4 SRP257291 SRR11568018 Gene expression in Arabidopsis expressing a Hyaloperonospora arabidopsidis effector
18.1 -4.1 -4.4 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
16.8 -4.1 -4.1 SRP103817 SRR5444474 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
16.4 4.4 3.8 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
16.0 -3.8 -4.2 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
16.0 -3.9 -4.1 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
15.4 4.0 3.9 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
15.4 3.9 4.0 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.9 4.1 3.6 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.6 3.9 3.7 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.4 -3.2 -4.5 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
14.4 -3.6 -4.0 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
14.1 -3.0 -4.7 SRP103817 SRR5444475 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
13.9 3.0 4.7 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
13.9 -3.5 -4.0 SRP100712 SRR5285649 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
13.8 -3.9 -3.5 SRP073379 SRR3393591 Arabidopsis BIC1 inactivates CRY2 by suppressing the blue light-dependent cryptochrome dimerization
13.7 -3.4 -4.0 SRP101274 SRR5308791 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
13.4 3.9 3.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
13.2 -3.0 -4.3 SRP100712 SRR5285650 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
13.2 -3.6 -3.7 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
13.2 3.6 3.7 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
13.1 -3.3 -4.0 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
13.0 -3.4 -3.9 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
12.9 -3.0 -4.4 SRP101274 SRR5308792 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
12.9 3.3 3.9 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.8 -3.8 -3.3 SRP255966 SRR11523461 Whole genome RNA-sequencing from roots of Arabidopsis thaliana wild-type and stop1 exposed to low pH, low phosphate (Pi), Aluminum and Iron excess conditions.
12.7 3.6 3.5 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
12.7 3.3 3.9 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.6 3.4 3.7 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.6 3.3 3.8 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.6 3.5 3.6 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.5 -4.2 -2.9 SRP091641 SRR4426620 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.3 -3.8 -3.2 ERP118109 ERR3624432 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
12.3 -3.8 -3.3 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
12.1 3.4 3.6 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.9 -3.5 -3.4 SRP039091 SRR1179986 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
11.8 -2.9 -4.1 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
11.8 3.2 3.6 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
11.7 3.4 3.4 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.6 -3.5 -3.3 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.4 -2.8 -4.1 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
11.4 3.3 3.5 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.3 -3.1 -3.7 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
11.2 3.6 3.1 SRP277946 SRR12470067 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.2 -3.1 -3.6 ERP115370 ERR3333436 Arabidopsis tissue atlas
11.1 -3.1 -3.6 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
11.0 -3.5 -3.2 SRP285090 SRR12697085 Differential alteration of plant functions by homologous fungal candidate effectors
11.0 -3.2 -3.5 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
11.0 -3.0 -3.7 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.9 -3.5 -3.1 SRP150217 SRR7289570 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.9 -2.9 -3.7 SRP150771 SRR7357980 RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
10.8 -3.4 -3.2 SRP103817 SRR5444476 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
10.7 -3.3 -3.3 SRP334993 SRR15679198 Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes
10.7 3.5 3.0 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
10.6 3.3 3.2 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -3.1 -3.4 SRP158306 SRR7694975 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
10.4 2.7 3.9 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
10.4 3.2 3.3 SRP277946 SRR12469846 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 -2.7 -3.9 SRP187381 SRR8662346 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
10.3 -3.0 -3.5 SRP163443 SRR8060876 RNAseq analysis of Arabidopsis to test for gene expression in response to low CO2 concentration
10.2 3.1 3.3 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
10.2 -2.9 -3.5 SRP100712 SRR5285667 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
10.2 -3.4 -3.0 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
10.2 3.3 3.0 SRP114806 SRR5894654 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.1 -3.0 -3.4 ERP115370 ERR3333439 Arabidopsis tissue atlas
10.0 -3.3 -3.0 SRP150217 SRR7289615 Widespread inter-individual gene expression variability in Arabidopsis thaliana
Note: Samples whose contribution is more than 10 are outputted.



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