CoexViewer

Coexpression detail for TADA and LINC3
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath TADA tRNA arginine adenosine deaminase 843202 At1g68720 0.86 9.88 11.45 5.63 19.80 2.46 3.13 1.74 2.97 1.84 6.59
ath LINC3 little nuclei3 843210 At1g68790 0.86
Platform:

coex z = 11.4502



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 843202
(z-scored expression)		 843210
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
41.9 -6.8 -6.2 SRP102178 SRR5360842 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
35.3 -4.8 -7.4 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
31.9 -5.7 -5.6 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
28.3 -5.3 -5.3 SRP345854 SRR16934641 Phytochrome B regulates reactive oxygen signaling during stress in plants.
22.6 -4.5 -5.0 ERP115370 ERR3333443 Arabidopsis tissue atlas
21.4 -4.4 -4.8 SRP103817 SRR5444474 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
19.6 -4.2 -4.7 SRP176451 SRR8404535 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
19.4 4.5 4.3 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
18.7 4.4 4.3 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
18.5 -3.3 -5.5 ERP118109 ERR3624434 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
18.3 4.2 4.4 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
18.3 -4.1 -4.5 SRP100933 SRR5304255 Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
18.3 -4.3 -4.3 SRP253504 SRR11359544 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
18.3 -4.4 -4.2 SRP257291 SRR11568018 Gene expression in Arabidopsis expressing a Hyaloperonospora arabidopsidis effector
17.4 -4.3 -4.1 SRP095347 SRR5120336 Genetic influences on gene expression in Arabidopsis thaliana
16.7 4.1 4.0 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
16.5 -4.5 -3.7 SRP361288 SRR18124836 Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory
15.4 -3.8 -4.1 SRP281951 SRR12620957 RNA-Seq experiment on Arabidopsis seedlings regarding SLIM1 and EIL1 function at low S
15.4 -4.7 -3.3 SRP103817 SRR5444476 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
14.8 -3.9 -3.8 SRP214585 SRR9681415 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
14.7 -3.8 -3.8 SRP119870 SRR6166379 Transcriptomic characterization of spl7 and Col-0 ecotypes of Arabidopsis reveals new aspects of Fe-Cu crosstalk
14.7 4.0 3.7 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
14.5 -4.3 -3.4 ERP118109 ERR3624432 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
14.4 3.9 3.7 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
14.2 -3.7 -3.9 SRP272650 SRR12272429 Transcriptome analysis of TPR1/TPL mutant lines during Pst AvrRps4- triggered immunity
14.2 -3.6 -3.9 SRP169564 SRR8206413 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
14.0 3.7 3.8 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.9 3.8 3.6 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
13.8 3.9 3.5 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
13.8 -3.6 -3.9 ERP106738 ERR2286776 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
13.6 -3.7 -3.7 SRP285902 SRR12747511 ­Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis
13.5 3.6 3.8 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.3 -3.8 -3.5 SRP132955 SRR6739821 Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression
13.1 -4.0 -3.3 SRP105272 SRR5482536 Cell type transcriptomic profile of the Arabidopsis root stem cell niche
13.0 -4.3 -3.0 SRP103817 SRR5444475 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
12.9 -3.4 -3.8 ERP116123 ERR3414642 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.9 -3.7 -3.5 ERP116123 ERR3414638 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.9 3.6 3.5 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.8 -3.6 -3.6 SRP251062 SRR11206305 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
12.7 -3.2 -4.0 SRP073379 SRR3393591 Arabidopsis BIC1 inactivates CRY2 by suppressing the blue light-dependent cryptochrome dimerization
12.7 3.6 3.5 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.7 3.6 3.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.6 -3.3 -3.8 SRP114806 SRR5894632 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.5 3.6 3.5 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.3 3.8 3.3 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.1 -3.0 -4.1 SRP285380 SRR12712238 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
12.0 -3.3 -3.6 SRP297585 SRR13239294 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
11.8 3.5 3.3 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.8 3.6 3.3 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
11.8 3.5 3.4 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
11.6 -3.5 -3.4 SRP073724 SRR3419765 Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system
11.6 -3.2 -3.6 SRP214585 SRR9681606 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
11.6 3.3 3.5 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.6 -3.4 -3.4 SRP251246 SRR11213957 Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
11.5 -3.3 -3.5 SRP101641 SRR5330614 Chloroplast signalling gates thermotolerance in Arabidopsis
11.5 -3.6 -3.2 SRP285380 SRR12712251 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
11.4 -3.1 -3.7 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.4 -2.8 -4.1 SRP073485 SRR3401786 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
11.4 -3.8 -3.0 SRP155742 SRR8699957 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
11.3 -3.3 -3.4 SRP285090 SRR12697085 Differential alteration of plant functions by homologous fungal candidate effectors
11.3 -2.6 -4.3 SRP091641 SRR4426620 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
11.2 3.5 3.3 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
11.2 -3.5 -3.2 SRP150217 SRR7289599 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.2 -2.9 -3.8 SRP066432 SRR2925730 Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor, MONGOOSE1
11.0 3.4 3.2 SRP166137 SRR8078926 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
11.0 -3.4 -3.3 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
11.0 -3.2 -3.4 SRP324081 SRR14813615 ARATH-IN-OUT
11.0 -3.2 -3.4 SRP362867 SRR18254735 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
11.0 -3.4 -3.2 SRP050945 SRR1696859 Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana
10.8 -3.3 -3.3 SRP097877 SRR5205677 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
10.7 3.2 3.3 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
10.6 -3.9 -2.7 SRP277946 SRR12469866 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.5 -3.4 -3.1 SRP277946 SRR12469806 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -3.4 -3.1 SRP220476 SRR10072739 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.4 3.3 3.2 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
10.4 -2.8 -3.8 SRP258701 SRR11614791 Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence
10.4 -3.7 -2.8 SRP090913 SRR4360366 WallOmics
10.4 -3.5 -3.0 SRP277946 SRR12469812 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 -3.3 -3.2 SRP039091 SRR1179986 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
10.3 -3.3 -3.1 SRP282437 SRR12642226 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
10.3 -3.2 -3.2 SRP083970 SRR4115297 The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
10.3 3.3 3.1 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
10.2 -3.1 -3.3 SRP214585 SRR9681611 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
10.1 -2.9 -3.5 ERP116123 ERR3414641 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.1 -3.4 -3.0 ERP116123 ERR3414637 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.0 3.1 3.2 SRP277946 SRR12470200 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
Note: Samples whose contribution is more than 10 are outputted.



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