CoexViewer
Coexpression detail for AT1G76580 and SPL14
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | AT1G76580 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | 843991 | At1g76580 | 0.72 | 5.01 | 4.08 | 4.57 | 47.50 | 3.76 | 4.19 | 0.53 | 1.56 | 1.68 | 2.97 | |
| ath | SPL14 | squamosa promoter binding protein-like 14 | 838692 | At1g20980 | 0.72 |
|
coex z = 4.084 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 843991 (z-scored expression) |
838692 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 30.6 | -5.3 | -5.7 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 30.0 | -4.8 | -6.3 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 25.4 | 4.8 | 5.3 | SRP325022 | SRR14877257 | Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells |
| 20.5 | -4.7 | -4.4 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 17.9 | -3.5 | -5.1 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 17.2 | -3.8 | -4.5 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 16.0 | 3.9 | 4.2 | SRP277946 | SRR12469638 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 15.6 | -3.8 | -4.1 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 15.5 | -5.4 | -2.8 | SRP100938 | SRR5304681 | During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight. |
| 15.5 | 3.3 | 4.7 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 15.0 | -4.3 | -3.5 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 14.1 | -3.9 | -3.7 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 13.8 | -3.6 | -3.8 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 13.6 | 3.7 | 3.7 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
| 13.6 | -3.8 | -3.6 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 12.9 | 3.4 | 3.7 | SRP311610 | SRR14028736 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 12.6 | -3.6 | -3.5 | SRP101641 | SRR5330614 | Chloroplast signalling gates thermotolerance in Arabidopsis |
| 12.5 | 3.6 | 3.5 | SRP277946 | SRR12470188 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.5 | 3.0 | 4.2 | SRP277946 | SRR12470184 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.3 | 3.3 | 3.7 | SRP280005 | SRR12583402 | The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana |
| 12.3 | 3.2 | 3.8 | SRP311610 | SRR14028737 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 12.2 | 3.3 | 3.7 | SRP311610 | SRR14028739 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 12.1 | -3.6 | -3.3 | SRP050945 | SRR1696859 | Gibberellin and Strigolactone signaling interplay in Arabidopsis thaliana |
| 12.1 | -3.2 | -3.8 | SRP150864 | SRR7367120 | Contribution of time of day and the circadian clock to the heat stress responsive transcriptome in Arabidopsis |
| 12.0 | 3.3 | 3.7 | SRP277946 | SRR12470208 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 12.0 | -4.0 | -3.0 | SRP150217 | SRR7289615 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 11.9 | -3.6 | -3.3 | SRP214585 | SRR9681378 | Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins |
| 11.8 | 3.3 | 3.5 | SRP037984 | SRR1170682 | Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression |
| 11.8 | 2.9 | 4.1 | SRP277946 | SRR12470192 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.7 | -3.1 | -3.8 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 11.5 | 3.0 | 3.8 | SRP277946 | SRR12470193 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 11.4 | 3.1 | 3.7 | SRP311610 | SRR14028738 | Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background |
| 11.3 | -3.4 | -3.3 | SRP065807 | SRR2927349 | Transcriptomics analysis of developing wild type and val1 mutant Arabidopsis embryos |
| 11.2 | -3.5 | -3.2 | SRP169564 | SRR8206413 | Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression |
| 11.1 | -4.3 | -2.6 | SRP253504 | SRR11359560 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 11.0 | -3.5 | -3.1 | SRP065994 | SRR2932456 | Identification of plant vacuolar transporters mediating phosphate storage |
| 11.0 | 3.3 | 3.4 | SRP277946 | SRR12470191 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.9 | -3.3 | -3.3 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.8 | -3.6 | -3.0 | SRP258701 | SRR11614791 | Ethylene modulates the dynamics of translation via GCN2 and EIN2 in Arabidopsis under submergence |
| 10.7 | -3.3 | -3.2 | SRP150217 | SRR7289570 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.7 | 3.4 | 3.1 | SRP277946 | SRR12469846 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.7 | -3.2 | -3.4 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.5 | -3.0 | -3.5 | SRP150217 | SRR7289599 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 10.4 | -3.7 | -2.8 | SRP173260 | SRR8310903 | Functional relationship of GUN1 and FUG1 in plastid proteostasis |
| 10.3 | 3.4 | 3.0 | SRP277946 | SRR12470190 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
| 10.2 | -2.6 | -3.9 | SRP253504 | SRR11359544 | Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves |
| 10.2 | -2.9 | -3.5 | SRP176451 | SRR8404535 | Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq] |
| 10.2 | -2.7 | -3.8 | SRP063017 | SRR2221848 | RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes |
| 10.1 | -3.1 | -3.3 | SRP294481 | SRR13156692 | RNAseq Analysis of wild type and nrt1.13 in normal or low nitrate condition |
| 10.1 | -2.9 | -3.5 | SRP119870 | SRR6166379 | Transcriptomic characterization of spl7 and Col-0 ecotypes of Arabidopsis reveals new aspects of Fe-Cu crosstalk |
| 10.1 | -3.1 | -3.3 | SRP073724 | SRR3419765 | Study of primary transcriptional changes induced by EDS1/PAD4 in Arabidopsis using an estradiol-inducible system |
| 10.0 | -3.1 | -3.3 | SRP277946 | SRR12469812 | RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE] |
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