CoexViewer
Coexpression detail for AT1G77550 and AT3G06530
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
Note: Samples whose contribution is more than 10 are outputted.
| Species | Symbol | Function* | Entrez Gene ID* | Other ID | Selected probe | Expression level (percentile) | coex z ath-u.c4-0 | coex z ath-r.c6-0 | coex z ath-m.c9-0 | coex z ath-m.c4-1_notissue | coex z ath-m.c4-2_tis | coex z ath-m.c4-2_str | coex z ath-m.c4-2_hor | coex z ath-m.c4-2_bio | coex z ath-m.c4-2_lig | coex z ath-e.c1-0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ath | AT1G77550 | tubulin-tyrosine ligase | 844091 | At1g77550 | 0.59 | 9.67 | 8.67 | 8.05 | 14.80 | 2.95 | 3.45 | 3.31 | 3.91 | 0.66 | 7.23 | |
| ath | AT3G06530 | ARM repeat superfamily protein | 819831 | At3g06530 | 0.59 |
|
coex z = 8.6733 |
|
Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.
| Sample contribution score* | 844091 (z-scored expression) |
819831 (z-scored expression) |
Experiment ID | Sample ID | Source Name in annotation |
|---|---|---|---|---|---|
| 23.5 | -4.6 | -5.1 | SRP278468 | SRR12495354 | Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions |
| 22.3 | -3.9 | -5.7 | ERP115370 | ERR3333443 | Arabidopsis tissue atlas |
| 21.7 | -5.1 | -4.3 | SRP102178 | SRR5360842 | A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
| 21.4 | -4.5 | -4.8 | SRP345854 | SRR16934641 | Phytochrome B regulates reactive oxygen signaling during stress in plants. |
| 20.8 | -4.7 | -4.4 | SRP090458 | SRR4295856 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat] |
| 19.3 | -4.5 | -4.3 | SRP095347 | SRR5120336 | Genetic influences on gene expression in Arabidopsis thaliana |
| 16.8 | -5.5 | -3.1 | SRP285380 | SRR12712251 | Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| 14.7 | -4.1 | -3.6 | SRP101641 | SRR5330614 | Chloroplast signalling gates thermotolerance in Arabidopsis |
| 14.5 | -4.0 | -3.6 | SRP091641 | SRR4426344 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 14.4 | -3.5 | -4.1 | SRP155742 | SRR8699957 | Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors |
| 14.4 | 4.1 | 3.5 | SRP114806 | SRR5894661 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 13.1 | 3.3 | 3.9 | SRP222258 | SRR15122126 | A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism |
| 12.9 | -3.6 | -3.6 | SRP150217 | SRR7289571 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.9 | -4.4 | -3.0 | SRP091641 | SRR4426351 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 12.9 | -3.7 | -3.5 | SRP132955 | SRR6739821 | Salicylic acid inhibits transcriptional repression activities of its receptors to promote defense gene expression |
| 12.8 | -3.1 | -4.2 | SRP302122 | SRR13450896 | The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq] |
| 12.4 | -3.8 | -3.2 | SRP100933 | SRR5304255 | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
| 12.4 | -4.0 | -3.1 | SRP150217 | SRR7289601 | Widespread inter-individual gene expression variability in Arabidopsis thaliana |
| 12.3 | -3.0 | -4.1 | SRP220476 | SRR10072738 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 12.1 | -4.0 | -3.0 | SRP091641 | SRR4426350 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 12.0 | -3.2 | -3.7 | ERP106738 | ERR2286776 | Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana |
| 11.9 | -3.5 | -3.4 | SRP126872 | SRR6381405 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 11.8 | -3.9 | -3.1 | SRP114806 | SRR5894632 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions |
| 11.8 | -3.2 | -3.6 | ERP106238 | ERR2245583 | PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis |
| 11.6 | 3.4 | 3.4 | SRP365283 | SRR18430906 | Time-series RNAseq analysis following lateral root induction by gravistimulation |
| 11.2 | -2.6 | -4.3 | SRP220476 | SRR10072739 | Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants |
| 11.1 | -3.5 | -3.2 | SRP285902 | SRR12747513 | Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis |
| 11.1 | -3.2 | -3.5 | SRP091641 | SRR4426346 | Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity |
| 11.1 | -3.2 | -3.5 | SRP093913 | SRR5054306 | Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis |
| 11.0 | -2.9 | -3.8 | SRP148438 | SRR7182861 | Leaf age dependent transcriptome analysis in response to abscisic acid |
| 11.0 | -3.2 | -3.5 | SRP105272 | SRR5482536 | Cell type transcriptomic profile of the Arabidopsis root stem cell niche |
| 10.7 | -3.6 | -3.0 | SRP126872 | SRR6381404 | B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis |
| 10.7 | -3.4 | -3.2 | SRP251246 | SRR11213957 | Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis |
| 10.7 | -3.3 | -3.3 | SRP090459 | SRR4296043 | RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI] |
| 10.7 | 3.5 | 3.1 | SRP285090 | SRR12697055 | Differential alteration of plant functions by homologous fungal candidate effectors |
| 10.6 | 2.9 | 3.6 | SRP254177 | SRR11429303 | Time course of brassinolide treatment on Arabidopsis seedlings |
| 10.5 | -3.3 | -3.2 | SRP187156 | SRR8648403 | Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection |
| 10.4 | 3.2 | 3.2 | SRP351684 | SRR17281133 | Transcriptomic profile of FERONIA mutant treated with Aradopside |
| 10.0 | 3.2 | 3.1 | SRP310860 | SRR13977116 | Spider mite egg extract modifies Arabidopsis response to future infestations |
The preparation time of this page was 1.5 [sec].
