cis; GAAGGCT

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GAAGGCT

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GAAGGCT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.55At5g05410DRE-binding protein (DREB2A) ((DREB2A)) AP2-EREBP
0.45At5g59820zinc finger (C2H2 type) family protein (ZAT12) ((RHL41)) C2H2
0.43At2g40350AP2 domain-containing transcription factor, putative (DREB2) AP2-EREBP
0.42At1g67970heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5) ((AT-HSFA8)) HSF
0.41At1g32870no apical meristem (NAM) family protein NAC
0.41At3g11020DRE-binding protein (DREB2B) ((DREB2B)) AP2-EREBP

link to other 304 cis elements in ATTED

similar seq.
←GAAGGCT→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; AGCCTTC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GAAGGCT1.000.0724
TTCTAGA0.720.1188
GTTCCCG0.710.06195
CTCCAGA0.710.0754
TCTAGAA0.690.1580
CTTCTAG0.690.1090
GCTGTAC0.680.0717
TCTGGAA0.680.0720
CTAGAAG0.670.0641
GCGAAGG0.660.0979