[][] ath   AT2G24790 Gene
functional annotation
Function   CONSTANS-like 3
GO BP
GO:0010161 [list] [network] red light signaling pathway  (10 genes)  IMP  
GO:0010099 [list] [network] regulation of photomorphogenesis  (34 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0043565 [list] [network] sequence-specific DNA binding  (796 genes)  IPI  
GO:0044212 [list] [network] transcription regulatory region DNA binding  (871 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_180052.1  NP_973530.1 
BLAST NP_180052.1  NP_973530.1 
Orthologous [Ortholog page] COL4 (ath)COL5 (ath)LOC4329950 (osa)LOC4336288 (osa)LOC7461603 (ppo)LOC7465448 (ppo)LOC7489168 (ppo)LOC11425462 (mtr)LOC11431452 (mtr)LOC11431470 (mtr)LOC100191137 (sly)LOC100244502 (vvi)LOC100246796 (vvi)LOC100281289 (zma)COL10 (gma)LOC100794431 (gma)LOC100802376 (gma)LOC100804201 (gma)COL8 (gma)LOC101254368 (sly)LOC101268413 (sly)LOC103249145 (bra)LOC103633651 (zma)LOC103641806 (zma)LOC103646270 (zma)LOC103837073 (bra)LOC103845200 (bra)LOC103864587 (bra)LOC103874359 (bra)LOC109945560 (zma)
Subcellular
localization
wolf
chlo 5,  mito 2,  cyto 1,  vacu 1  (predict for NP_180052.1)
chlo 5,  mito 1,  vacu 1,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  cyto_mito 1,  nucl_plas 1,  E.R._vacu 1,  cyto_plas 1  (predict for NP_973530.1)
Subcellular
localization
TargetP
scret 4,  other 3  (predict for NP_180052.1)
scret 4,  other 3  (predict for NP_973530.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with COL3 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
5.9 COL4 zinc finger CONSTANS-like protein [detail] 832563
5.1 AT3G63540 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [detail] 7922413
5.0 CHLM magnesium-protoporphyrin IX methyltransferase [detail] 828611
Coexpressed
gene list
[Coexpressed gene list for COL3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263537_at
263537_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263537_at
263537_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
263537_at
263537_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 817016    
Refseq ID (protein) NP_180052.1 
NP_973530.1 


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