[←][→] ath   At2g47890 Gene
functional annotation
Function   B-box type zinc finger protein with CCT domain-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010218 [list] [network] response to far red light  (48 genes)  IEP  
GO:0010114 [list] [network] response to red light  (101 genes)  IEP  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IEP  
GO:0009637 [list] [network] response to blue light  (160 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  TAS  
GO:0009416 [list] [network] response to light stimulus  (1981 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1277 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001324500.1  NP_182310.1  NP_973712.1 
BLAST NP_001324500.1  NP_182310.1  NP_973712.1 
Orthologous [Ortholog page] LOC4332842 (osa)  LOC4344220 (osa)  LOC7491323 (ppo)  LOC11434778 (mtr)  LOC18111297 (ppo)  COL9 (gma)  LOC100796874 (gma)  LOC100798117 (gma)  COL15 (gma)  LOC101258781 (sly)  LOC103866340 (bra)  LOC123040720 (tae)  LOC123051656 (tae)  LOC123085861 (tae)  LOC123091991 (tae)  LOC123097493 (tae)  LOC123187586 (tae)  LOC123429504 (hvu)  LOC123448668 (hvu) 
Subcellular
localization
wolf
nucl 5,  cyto 4,  chlo 1,  extr 1  (predict for NP_001324500.1)
nucl 4,  cyto 4,  chlo 1,  extr 1,  golg 1  (predict for NP_182310.1)
nucl 3,  golg 2,  cyto_nucl 2,  cyto 1,  mito 1,  cysk_nucl 1,  golg_plas 1  (predict for NP_973712.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001324500.1)
other 9  (predict for NP_182310.1)
other 9  (predict for NP_973712.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
Genes directly connected with AT2G47890 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.2 LZF1 light-regulated zinc finger protein 1 [detail] 844196
7.1 GPX6 glutathione peroxidase 6 [detail] 826765
6.1 LTI30 dehydrin family protein [detail] 824261
5.6 AT1G70420 DNA ligase-like protein, putative (DUF1645) [detail] 843378
Coexpressed
gene list		 [Coexpressed gene list for AT2G47890]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266514_at
266514_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266514_at
266514_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266514_at
266514_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819401      
Refseq ID (protein) NP_001324500.1 
NP_182310.1 
NP_973712.1 


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