[][] ath   AT5G56860 Gene
functional annotation
Function   GATA type zinc finger transcription factor family protein
GO BP
GO:0010151 [list] [network] chloroplast elongation  (2 genes)  IMP  
GO:0043610 [list] [network] regulation of carbohydrate utilization  (2 genes)  IMP  
GO:0010255 [list] [network] glucose mediated signaling pathway  (5 genes)  IMP  
GO:1902326 [list] [network] positive regulation of chlorophyll biosynthetic process  (6 genes)  IMP  
GO:0009938 [list] [network] negative regulation of gibberellic acid mediated signaling pathway  (15 genes)  IMP  
GO:0010380 [list] [network] regulation of chlorophyll biosynthetic process  (19 genes)  IMP  
GO:0010187 [list] [network] negative regulation of seed germination  (23 genes)  IEP  
GO:0080050 [list] [network] regulation of seed development  (45 genes)  IMP  
GO:0009910 [list] [network] negative regulation of flower development  (50 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (63 genes)  IMP  
GO:0009736 [list] [network] cytokinin-activated signaling pathway  (66 genes)  IMP  
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway  (71 genes)  IEP  
GO:0010029 [list] [network] regulation of seed germination  (84 genes)  IMP  
GO:0009735 [list] [network] response to cytokinin  (102 genes)  IEP  
GO:0007623 [list] [network] circadian rhythm  (111 genes)  IEP  
GO:0090693 [list] [network] plant organ senescence  (117 genes)  IMP  
GO:0009739 [list] [network] response to gibberellin  (154 genes)  IEP  
GO:0009658 [list] [network] chloroplast organization  (194 genes)  IMP  
GO:0009733 [list] [network] response to auxin  (407 genes)  IEP  
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IEP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2484 genes)  IDA  
GO:0051171 [list] [network] regulation of nitrogen compound metabolic process  (2551 genes)  IEP IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IMP ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0043565 [list] [network] sequence-specific DNA binding  (796 genes)  IEA  
GO:0044212 [list] [network] transcription regulatory region DNA binding  (871 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_200497.1 
BLAST NP_200497.1 
Orthologous [Ortholog page] CGA1 (ath)LOC7470700 (ppo)LOC11439186 (mtr)LOC25494244 (mtr)LOC100247474 (vvi)LOC100261004 (vvi)LOC100780875 (gma)LOC100792098 (gma)LOC100810090 (gma)LOC100810698 (gma)LOC101262132 (sly)LOC101268354 (sly)LOC103845114 (bra)LOC103851805 (bra)LOC103856792 (bra)LOC103861615 (bra)LOC103865903 (bra)
Subcellular
localization
wolf
nucl 10  (predict for NP_200497.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_200497.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with GNC on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
9.6 CGA1 cytokinin-responsive gata factor 1 [detail] 828721
7.4 PEX11B peroxin 11B [detail] 823897
7.2 CIA2 chloroplast import apparatus 2 [detail] 835824
6.5 AT5G47610 RING/U-box superfamily protein [detail] 834811
6.5 PMI2 PLASTID MOVEMENT IMPAIRED protein (DUF827) [detail] 843002
6.5 ZFP8 zinc finger protein 8 [detail] 818794
5.3 AT2G31560 signal transducer/transcription protein, putative (DUF1685) [detail] 817714
4.8 KAN2 Homeodomain-like superfamily protein [detail] 840116
4.7 GIS C2H2 and C2HC zinc fingers superfamily protein [detail] 824976
Coexpressed
gene list
[Coexpressed gene list for GNC]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247980_at
247980_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247980_at
247980_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
247980_at
247980_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 835788    
Refseq ID (protein) NP_200497.1 


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