[←][→] ath   At5g56860 Gene
functional annotation
Function   GATA type zinc finger transcription factor family protein      
GO BP
GO:0010151 [list] [network] chloroplast elongation  (2 genes)  IMP  
GO:0043610 [list] [network] regulation of carbohydrate utilization  (2 genes)  IMP  
GO:0010255 [list] [network] glucose mediated signaling pathway  (5 genes)  IMP  
GO:1902326 [list] [network] positive regulation of chlorophyll biosynthetic process  (7 genes)  IMP  
GO:0009938 [list] [network] negative regulation of gibberellic acid mediated signaling pathway  (15 genes)  IMP  
GO:0010380 [list] [network] regulation of chlorophyll biosynthetic process  (23 genes)  IMP  
GO:0080050 [list] [network] regulation of seed development  (26 genes)  IMP  
GO:0010187 [list] [network] negative regulation of seed germination  (27 genes)  IEP  
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway  (42 genes)  IEP  
GO:0009910 [list] [network] negative regulation of flower development  (55 genes)  IMP  
GO:0009736 [list] [network] cytokinin-activated signaling pathway  (70 genes)  IMP  
GO:0010029 [list] [network] regulation of seed germination  (93 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (94 genes)  IMP  
GO:0009739 [list] [network] response to gibberellin  (116 genes)  IEP  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IEP  
GO:0009735 [list] [network] response to cytokinin  (123 genes)  IEP  
GO:0009658 [list] [network] chloroplast organization  (209 genes)  IMP  
GO:0090693 [list] [network] plant organ senescence  (211 genes)  IMP  
GO:0009733 [list] [network] response to auxin  (384 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (1981 genes)  IEP  
GO:0051171 [list] [network] regulation of nitrogen compound metabolic process  (2081 genes)  IEP IMP  
GO:0010468 [list] [network] regulation of gene expression  (2177 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IMP ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_200497.1 
BLAST NP_200497.1 
Orthologous [Ortholog page] CGA1 (ath)  LOC7470700 (ppo)  LOC11422443 (mtr)  LOC11439186 (mtr)  LOC18107608 (ppo)  LOC25494244 (mtr)  LOC100780326 (gma)  LOC100780875 (gma)  LOC100792098 (gma)  LOC100810090 (gma)  LOC100810698 (gma)  LOC101262132 (sly)  LOC101268354 (sly)  LOC102659929 (gma)  LOC102664611 (gma)  LOC103845114 (bra)  LOC103851805 (bra)  LOC103856792 (bra)  LOC103861615 (bra)  LOC103865903 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_200497.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_200497.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with GNC on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.9 CGA1 cytokinin-responsive gata factor 1 [detail] 828721
7.6 CIA2 chloroplast import apparatus 2 [detail] 835824
7.1 PEX11B peroxin 11B [detail] 823897
7.0 ZFP8 zinc finger protein 8 [detail] 818794
6.1 AT5G47610 RING/U-box superfamily protein [detail] 834811
5.2 GIS C2H2 and C2HC zinc fingers superfamily protein [detail] 824976
5.2 KAN2 Homeodomain-like superfamily protein [detail] 840116
Coexpressed
gene list		 [Coexpressed gene list for GNC]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
247980_at
247980_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
247980_at
247980_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
247980_at
247980_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835788      
Refseq ID (protein) NP_200497.1 


The preparation time of this page was 0.1 [sec].