Expression viewer

Gene annotation for AT2G39725

Platform:
Species ath
Symbol AT2G39725
Function* LYR family of Fe/S cluster biogenesis protein
Entrez Gene ID* 818557
Other ID At2g39725




Expression pattern of AT2G39725



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
8.7 SRP244461 SRR10959655 CASPARIAN STRIP INTEGRITY FACTOR 2 (CIF2) peptide induces SCHENGEN3 (SGN3) receptor-kinase dependent transcriptional changes
8.7 ERP015521 ERR1406301 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
8.6 SRP237340 SRR10677220 MYB30 orchestras ROS wave-triggered systemic transcriptomic responses and plant acclimation in Arabidopsis
8.5 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
8.5 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
8.4 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
8.4 SRP155742 SRR7620901 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
8.4 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
8.2 SRP187062 SRR8645764 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
8.2 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
8.2 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
8.2 SRP097877 SRR5205694 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
8.2 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
8.1 SRP155742 SRR7620862 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
8.1 SRP108336 SRR5631429 Genome-wide gene expression profile from Arabidopsis epiRILs, epiHybrids and Colombia wild type
8.0 SRP136641 SRR6908911 Gene expression profiling (RNA-seq) in wild-type and bdrs triple mutant Arabidopsis seedlings in response to light or to a heat shock
8.0 SRP114806 SRR5894725 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
7.9 SRP199288 SRR9113131 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
7.9 SRP255728 SRR11510194 Transcriptome analysis of EDS1 4h after Pst AvrRps4- triggered immunity
7.9 SRP267870 SRR12046060 Single-cell RNA-seq data of Arabidopsis root
7.9 SRP324081 SRR14813597 ARATH-IN-OUT
7.9 SRP362867 SRR18254734 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
7.9 SRP051393 SRR1726976 RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants
7.9 SRP017386 SRR627642 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
7.9 SRP097877 SRR5205617 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
7.9 SRP095347 SRR5120424 Genetic influences on gene expression in Arabidopsis thaliana
7.9 SRP267870 SRR12046059 Single-cell RNA-seq data of Arabidopsis root
7.9 SRP238842 SRR10769009 Next Generation Sequencing Facilitates Quantitative Analysis of in 14-day-old wt, brm-1, brm-3, brip1, brip2, brip1 brip2, brip1 brip2 brm-3 and brip1 brip2 brm-1 seedlings.
7.8 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
7.8 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
7.8 SRP014482 SRR525107 Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
7.8 SRP331164 SRR15347022 The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis [RNA-seq]
7.8 SRP238608 SRR10760433 Gene expression profiling (RNA-seq) in wild-type Arabidopsis seedlings in response to heat acclimation and heat shock
7.8 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
7.8 SRP114806 SRR5894659 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
7.8 SRP201971 SRR9331161 RNA-seq analysis of transcriptome reprofiling triggered by different pattern-recognition receptor types
7.8 SRP052858 SRR1773569 Transcriptome-wide identification of Arabidopsis messenger RNAs transported between tissues
7.8 SRP041308 SRR1257406 Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis
7.7 SRP201761 SRR9320303 Time course of the Arabidopsis root stem cells
7.7 SRP220476 SRR10072747 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
7.7 SRP095347 SRR5120428 Genetic influences on gene expression in Arabidopsis thaliana
7.7 SRP200395 SRR9200700 UVR8-mediated changes in gene expression in response to UV-B, compared to genes misexpressed in pif4pif5 mutants
7.7 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
7.7 SRP279501 SRR12558734 Leaf excision evokes an ultradian gene expression rhythm to prime de novo root regeneration
7.7 SRP282437 SRR12642100 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
7.7 SRP126290 SRR6356047 RNA-Seq Analysis of Genes Differentially Expressed across temporal and spatial deposition of wall ingrowths in Arabidopsis Phloem Parenchyma Transfer Cells
7.6 SRP254177 SRR11429299 Time course of brassinolide treatment on Arabidopsis seedlings
7.6 ERP118500 ERR3668659 Transcription profiling of Arabidopsis thaliana leaves as reaction to caterpillar (Trichoplusia ni) feeding and fungi (Laccaria bicolor) infection of the roots
7.6 SRP188270 SRR8717637 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
7.6 SRP220476 SRR10072748 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
7.6 SRP071947 SRR3234404 Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I]
7.6 SRP091641 SRR4426794 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
7.6 SRP139789 SRR6989662 DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis [RNA-seq]
7.6 SRP238842 SRR10769006 Next Generation Sequencing Facilitates Quantitative Analysis of in 14-day-old wt, brm-1, brm-3, brip1, brip2, brip1 brip2, brip1 brip2 brm-3 and brip1 brip2 brm-1 seedlings.
7.6 SRP299921 SRR13338313 Transcriptome profiles of different light-signaling mutants
7.6 SRP101641 SRR5330611 Chloroplast signalling gates thermotolerance in Arabidopsis
7.6 SRP370448 SRR18767860 Arabidopsis thaliana Transcriptome or Gene expression
7.6 SRP277943 SRR12469327 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST]
7.6 ERP118109 ERR3624356 Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
7.6 SRP237340 SRR10677244 MYB30 orchestras ROS wave-triggered systemic transcriptomic responses and plant acclimation in Arabidopsis
7.6 SRP101965 SRR5346192 Salicylic acid-dependent and -independent transcriptome changes in response to methyl-erythritol cyclodiphosphate accumulation
7.5 SRP271641 SRR12211735 Arabidopsis thaliana ecotypes Rodasen-47 (Sweden) and Castelnuovo-12 (Italy) grown in high light and/or cold
7.5 SRP166137 SRR8078941 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
7.5 SRP315323 SRR14272439 Agrobacterium VirE2 Protein Modulates Plant Gene Expression and Mediates Transformation from Its Location in the Cytoplasm
7.5 SRP100064 SRR5263126 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
7.5 SRP365283 SRR18430925 Time-series RNAseq analysis following lateral root induction by gravistimulation
7.5 SRP285119 SRR12698849 Time of day prioritizes the pool of translating mRNAs in response to heat stress
7.5 SRP090457 SRR4295764 RNA-seq of Arabidopsis thaliana seedlings treated with MeJA or flg22 under full and low phosphate conditions
7.5 SRP251392 SRR11218908 Global transcriptional patterns in irr and wild-type plants
7.5 SRP149815 SRR7267002 Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity
7.5 SRP188270 SRR8717636 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
7.5 SRP080774 SRR3992511 Comparative transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana
7.5 SRP161596 SRR7822645 Identification of regulators of vascular proliferation
7.5 SRP214585 SRR9681426 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
7.5 SRP028855 SRR953028 Arabidopsis thaliana Transcriptome or Gene expression
7.5 SRP095347 SRR5120423 Genetic influences on gene expression in Arabidopsis thaliana
7.5 SRP187062 SRR8645793 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
7.5 SRP306752 SRR13724845 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_20]
7.5 SRP193460 SRR8944866 Selective egg cell polyspermy bypasses the triploid block
7.5 SRP285119 SRR12698892 Time of day prioritizes the pool of translating mRNAs in response to heat stress
7.5 SRP154099 SRR7529159 Transcriptome analysis of Arabidopsis thaliana photoreceptor mutants impaired in UV and blue light signaling
7.5 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
7.4 SRP100938 SRR5304783 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
7.4 SRP039091 SRR1179978 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
7.4 SRP071212 SRR3207080 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type (Col), hda6, hda5, hda9, fld and fve mutants
7.4 SRP266555 SRR11962556 Transcriptome analyses of mock- and Pst DC3000-inoculated Arabidopsis thaliana Col-0 plants at normal and elevated temperature
7.4 SRP327928 SRR15100972 Auxin requirements for a meristematic state in roots depend on a dual brassinosteroid function
7.4 SRP357889 SRR17847293 Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
7.4 SRP288594 SRR12899039 Transcriptional response of A. thaliana Root and Shoot tissue to light stress and presence of microbial communities in myc2-3 and MYC2-Flag lines
7.4 SRP149149 SRR7227788 Coordinated regulation of pre-mRNA splicing by the SFPS-RRC1 complex to promote photomorphogenesis in Arabidopsis
7.4 SRP100064 SRR5262956 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
7.4 SRP288674 SRR12903429 A. thaliana WT and ICT1 mutant treated vs. non treated with I3C
7.4 SRP101274 SRR5309162 During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
7.4 SRP161596 SRR7822646 Identification of regulators of vascular proliferation
7.4 SRP017386 SRR627641 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
7.4 SRP100064 SRR5262963 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
7.4 SRP100712 SRR5286020 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
7.4 SRP279454 SRR12554223 RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis
7.4 SRP301115 SRR13397402 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
7.4 SRP114806 SRR5894611 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
The output is the 100 samples with the largest contribution to the coexpression.



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