Expression viewer

Gene annotation for AT2G47560

Platform:
Species ath
Symbol AT2G47560
Function* RING/U-box superfamily protein
Entrez Gene ID* 819369
Other ID At2g47560




Expression pattern of AT2G47560



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
14.0 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
11.7 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.0 SRP277946 SRR12470065 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.5 SRP277946 SRR12470064 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.2 SRP277946 SRR12470066 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.2 SRP307570 SRR13765636 RNA-seq of floe1-1 vs Col-0 seeds
8.2 SRP267137 SRR12005728 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
8.1 SRP277946 SRR12470067 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.1 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
8.1 SRP267137 SRR12005733 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
8.1 SRP098906 SRR5231012 The PIF4 controlled auxin pathway contributes to hybrid vigor in Arabidopsis thaliana
7.9 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.9 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.9 SRP378009 SRR19505581 Transcriptional Reprogramming during Floral Fate Acquisition III
7.8 SRP253507 SRR11359759 Time-lapse RNA-seq analysis to study transcriptional regulation by early signals in De Novo Root Regeneration in Arabidopsis
7.8 SRP065316 SRR2828728 Correlative Controls of Seeds over Maternal Growth and Senescence in Arabidopsis
7.7 SRP222258 SRR15122102 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
7.7 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.7 SRP103736 SRR5440897 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
7.6 ERP023520 ERR2007982 Transcriptomes and differential gene expression in the Arabidopsis shoot phloem companion cells during flowering
7.6 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
7.6 SRP114806 SRR5894653 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
7.6 SRP173766 SRR8335143 Genome-wide analysis of transcription and PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana
7.5 SRP365283 SRR18430925 Time-series RNAseq analysis following lateral root induction by gravistimulation
7.5 SRP251392 SRR11218908 Global transcriptional patterns in irr and wild-type plants
7.4 SRP110833 SRR5796517 Arabidopsis thaliana WT and mutant cngc16 pollen grain heat stress transcriptome
7.4 SRP091641 SRR4426512 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
7.4 SRP277946 SRR12470074 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.4 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.3 SRP291935 SRR13016056 A MKP-MAPK protein phosphorylation cascade controls vascular disease resistance in plants
7.3 SRP267137 SRR12005779 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
7.3 SRP091641 SRR4426481 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
7.3 SRP028855 SRR953034 Arabidopsis thaliana Transcriptome or Gene expression
7.3 SRP339822 SRR16174739 Transcriptomics study of a temperature sensitive mutant (E170K, shot2) in CstF77, a subunit of 3' end mRNA maturation complex in Arabidopsis thaliana
7.3 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
7.3 SRP126574 SRR6369500 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
7.3 SRP244461 SRR10959629 CASPARIAN STRIP INTEGRITY FACTOR 2 (CIF2) peptide induces SCHENGEN3 (SGN3) receptor-kinase dependent transcriptional changes
7.3 SRP287556 SRR12833427 Transcriptome in WT Col-0 and RLK7ECD-MIK2TK transgenic plants upon PIP1 treatment
7.2 SRP306749 SRR13724788 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_11]
7.2 SRP267137 SRR12005765 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
7.2 SRP307584 SRR13765852 RNA-seq of ?DS deletion vs +WT Complemented seeds
7.2 SRP052302 SRR1761508 mRNA-seq of ros1-3 and ros1-4 with ABA treatment
7.2 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
7.2 SRP091641 SRR4426534 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
7.2 SRP169564 SRR8206401 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
7.2 SRP282437 SRR12642262 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
7.2 ERP106738 ERR2286780 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
7.2 SRP234996 SRR10603594 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
7.2 SRP091641 SRR4426731 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
7.1 ERP123539 ERR4471708 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
7.1 SRP229078 SRR10416653 Global transcriptomic analysis of Arabidopsis thaliana ecotype Columbia-0 subjected to magnesium deficiency
7.1 SRP114806 SRR5894644 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
7.1 SRP052858 SRR1773570 Transcriptome-wide identification of Arabidopsis messenger RNAs transported between tissues
7.1 SRP091641 SRR4426765 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
7.1 SRP219435 SRR10027528 The LRX-RALF-FER cell wall integrity sensing module controls plant growth and salt stress responses by modulating multiple plant hormones
7.1 SRP277946 SRR12469860 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.1 SRP044123 SRR1508462 The CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis
7.1 SRP044123 SRR1508468 The CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis
7.1 SRP222258 SRR15122062 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
7.1 SRP222258 SRR15122069 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
7.1 SRP222258 SRR15122074 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
7.1 SRP222258 SRR15209490 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
7.1 SRP201761 SRR9320298 Time course of the Arabidopsis root stem cells
7.1 SRP267137 SRR12005738 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
7.1 SRP150771 SRR7357996 RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
7.1 SRP103736 SRR5440887 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
7.1 SRP126574 SRR6369439 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
7.0 SRP285380 SRR12712256 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
7.0 SRP282437 SRR12642281 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
7.0 ERP122723 ERR4318757 RNA-seq of Arabidopsis thaliana leaves for three genotypes (Col-0 wild type, gsnor1-3, axe1-5/hda6) in low light and dark conditions
7.0 SRP083970 SRR4115372 The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
7.0 SRP016025 SRR584126 Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the eukaryotic steady state transcriptome
7.0 SRP324081 SRR14813636 ARATH-IN-OUT
7.0 SRP362867 SRR18254714 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
7.0 SRP282437 SRR12642264 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
7.0 SRP285868 SRR12746044 Transcriptional responses of wild-type and zin1 mutant Arabidopsis plants to infection with Pseudomonas syringae
7.0 SRP277946 SRR12469846 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.0 SRP267137 SRR12005772 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
7.0 SRP199288 SRR9113158 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
7.0 SRP091641 SRR4426637 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
7.0 SRP190896 SRR8850907 mRNA sequencing of msh1 memory line and non-memory (normal looking) sibling plants with isogenic Col-0 wild-type control in Arabidopsis
7.0 SRP297920 SRR13253075 Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
6.9 SRP186316 SRR8592610 PRC2-mediated H3K27me3 contributes to transcriptional regulation of FIT-mediated iron deficiency response
6.9 SRP148699 SRR7204049 An essential role for Abscisic acid in the regulation of xylem fibre differentiation
6.9 SRP033023 SRR1030244 Analysis of the RDR6-dependent ein5 ski2 transcriptome profile in Arabidopsis
6.9 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
6.9 SRP307581 SRR13765741 A domesticated Harbinger transposase forms a complex with HDA6 and promotes histone H3 deacetylation at genes but not TEs in Arabidopsis
6.9 SRP201971 SRR9331196 RNA-seq analysis of transcriptome reprofiling triggered by different pattern-recognition receptor types
6.9 SRP029598 SRR976160 Arabidopsis thaliana Transcriptome under Salt Stress
6.9 SRP172049 SRR8271808 Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq]
6.9 SRP187381 SRR8662005 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
6.9 SRP126574 SRR6369494 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
6.9 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
6.9 SRP091641 SRR4426482 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
6.9 SRP285380 SRR12712255 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
6.9 SRP108261 SRR5627265 RNAseq data for Arabidopsis TF mutants during germination
6.9 SRP076862 SRR3707815 Ethylene induced phosphorylation of CBP20 is involved in root growth [RNA-seq]
6.9 SRP151058 SRR7408202 botrytisxn - Nitrogen nutrition and pathogen susceptibility: priming by metabolism.
6.8 SRP371011 SRR18808295 Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
6.8 SRP091641 SRR4426602 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
The output is the 100 samples with the largest contribution to the coexpression.



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