Expression viewer

Gene annotation for AT3G09540

Platform:
Species ath
Symbol AT3G09540
Function* Pectin lyase-like superfamily protein
Entrez Gene ID* 820111
Other ID At3g09540




Expression pattern of AT3G09540



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
10.5 ERP123539 ERR4471725 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.9 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
9.9 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.9 SRP021196 SRR1610502 RNA-Seq of single cells from the Arabidopsis root
9.9 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
9.8 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
9.8 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
9.8 ERP123539 ERR4471728 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.7 ERP123539 ERR4471727 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.7 ERP123539 ERR4471729 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.6 ERP123539 ERR4471726 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.5 SRP277946 SRR12470065 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
9.5 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
9.4 SRP095347 SRR5120423 Genetic influences on gene expression in Arabidopsis thaliana
9.4 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.4 SRP097877 SRR5205680 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
9.4 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
9.4 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
9.4 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
9.4 ERP123539 ERR4471733 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.4 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
9.4 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
9.4 SRP238842 SRR10769010 Next Generation Sequencing Facilitates Quantitative Analysis of in 14-day-old wt, brm-1, brm-3, brip1, brip2, brip1 brip2, brip1 brip2 brm-3 and brip1 brip2 brm-1 seedlings.
9.4 ERP123539 ERR4471731 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.3 ERP123539 ERR4471732 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.3 ERP123539 ERR4471730 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.2 SRP151817 SRR7465414 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
9.2 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
9.2 SRP051763 SRR1744361 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
9.2 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
9.1 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.1 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.1 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.1 SRP007484 SRR309160 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
9.1 SRP277946 SRR12470195 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.0 SRP188270 SRR8717650 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
9.0 SRP201761 SRR9320303 Time course of the Arabidopsis root stem cells
9.0 SRP014482 SRR525107 Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
9.0 SRP112501 SRR5831027 Combining chemical and genetic approaches to increase drought resistance in plants
9.0 SRP093766 SRR5045312 Transcriptomic analysis of dorso-ventral cell-types of Arabidopsis shoot apical meristem
9.0 SRP277946 SRR12470187 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.0 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.9 SRP068171 SRR3318769 Arabidopsis thaliana cultivar:Col Transcriptome or Gene expression
8.9 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.9 SRP151817 SRR7465450 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
8.9 SRP114806 SRR5894427 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
8.9 SRP051763 SRR1744360 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
8.9 SRP041308 SRR1257406 Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis
8.9 SRP049993 SRR1655117 Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
8.9 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
8.9 ERP015521 ERR1406298 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
8.8 SRP104119 SRR5452983 Time course of the Arabidopsis thaliana root meristem
8.8 SRP255966 SRR11523452 Whole genome RNA-sequencing from roots of Arabidopsis thaliana wild-type and stop1 exposed to low pH, low phosphate (Pi), Aluminum and Iron excess conditions.
8.8 SRP114806 SRR5894522 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
8.8 SRP090457 SRR4295746 RNA-seq of Arabidopsis thaliana seedlings treated with MeJA or flg22 under full and low phosphate conditions
8.8 SRP052858 SRR1773586 Transcriptome-wide identification of Arabidopsis messenger RNAs transported between tissues
8.8 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.8 SRP194106 SRR8983767 Arabidopsis thaliana 35S:ANT-GR Transcriptome
8.8 SRP108336 SRR5631429 Genome-wide gene expression profile from Arabidopsis epiRILs, epiHybrids and Colombia wild type
8.8 SRP351690 SRR17281225 Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time [RNA-seq]
8.8 SRP173235 SRR8310093 Mediator12 and 13 act as conditional anti-silencing factors in Arabidopsis [RNA-seq]
8.8 SRP097877 SRR5205619 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
8.7 SRP253504 SRR11359543 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
8.7 SRP122518 SRR6230504 Potential role of the CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
8.7 SRP070918 SRR3193434 Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2.
8.7 SRP108634 SRR5646725 Locus-specific control of the de novo DNA methylation pathway [mRNA-seq]
8.7 SRP154322 SRR7536133 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
8.7 SRP244461 SRR10959636 CASPARIAN STRIP INTEGRITY FACTOR 2 (CIF2) peptide induces SCHENGEN3 (SGN3) receptor-kinase dependent transcriptional changes
8.7 SRP018266 SRR653569 Genome-wide analysis of LINK1 and LINK2 effects on the Arabidopsis transcriptome
8.7 SRP098795 SRR5227417 RNA-seq data over Arabidopsis thaliana germination
8.7 SRP051763 SRR1744355 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
8.7 SRP149815 SRR7267228 Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity
8.7 SRP189792 SRR8800758 Role of AtMLKLs in response to powdery mildew fungus
8.7 SRP324081 SRR14813593 ARATH-IN-OUT
8.7 SRP362867 SRR18254726 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
8.7 ERP115136 ERR3310295 RNA-seq of circadian timeseries sampling (LL2-3) of 13-14 day old Arabidopsis thaliana Col-0 (24 h to 68 h, sampled every 4 h)
8.7 SRP061868 SRR2136677 Expression profiling during early flower development [RNA-seq]
8.7 SRP103736 SRR5440842 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
8.7 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.7 SRP255966 SRR11523465 Whole genome RNA-sequencing from roots of Arabidopsis thaliana wild-type and stop1 exposed to low pH, low phosphate (Pi), Aluminum and Iron excess conditions.
8.7 SRP090458 SRR4295841 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
8.7 SRP090458 SRR4295873 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
8.7 SRP188270 SRR8717651 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
8.7 SRP102178 SRR5360832 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
8.6 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
8.6 SRP188270 SRR8717652 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
8.6 ERP113389 ERR3079489 The effect of ?-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
8.6 SRP169564 SRR8206378 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
8.6 SRP277946 SRR12470189 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.6 SRP188270 SRR8717649 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
8.6 SRP097877 SRR5205803 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
8.6 SRP098795 SRR5227416 RNA-seq data over Arabidopsis thaliana germination
8.6 SRP223642 SRR10200410 Control of root thermomorphogenesis by systemic and local regulatory signals (18h RNA-seq)
8.6 SRP248470 SRR11075169 A dynamic network reveals the novel characteristics of miRNA regulation over time in response to the ABA hormone in Arabidopsis (mRNA)
8.6 SRP095347 SRR5120422 Genetic influences on gene expression in Arabidopsis thaliana
8.6 SRP114806 SRR5894525 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
8.6 SRP154323 SRR7536272 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
8.6 SRP244461 SRR10959657 CASPARIAN STRIP INTEGRITY FACTOR 2 (CIF2) peptide induces SCHENGEN3 (SGN3) receptor-kinase dependent transcriptional changes
8.6 SRP098795 SRR5227415 RNA-seq data over Arabidopsis thaliana germination
The output is the 100 samples with the largest contribution to the coexpression.



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