Expression viewer

Gene annotation for 4CL5

Platform:
Species ath
Symbol 4CL5
Function* 4-coumarate:CoA ligase 5
Entrez Gene ID* 821677
Other ID At3g21230




Expression pattern of 4CL5



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
11.3 SRP253507 SRR11359746 Time-lapse RNA-seq analysis to study transcriptional regulation by early signals in De Novo Root Regeneration in Arabidopsis
11.1 SRP102178 SRR5360868 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.1 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.1 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
10.7 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.7 SRP199288 SRR9113141 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
10.6 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.6 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
10.4 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 SRP220476 SRR10072749 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.3 SRP220476 SRR10072748 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.2 SRP220476 SRR10072751 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.2 SRP220476 SRR10072747 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.2 SRP136269 SRR6880728 Cold priming and triggering of Arabidopsis accessions
10.2 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
10.2 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
10.2 SRP220476 SRR10072752 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.1 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 SRP346154 SRR16948976 Plants grow in lunar regolith
10.1 SRP220476 SRR10072755 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.1 SRP378009 SRR19505581 Transcriptional Reprogramming during Floral Fate Acquisition III
10.1 SRP331164 SRR15347022 The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis [RNA-seq]
10.1 SRP220476 SRR10072750 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.0 SRP220476 SRR10072753 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.0 SRP149670 SRR7252675 Effect of GA on PAC and PAO1 treated Arabidopsis seeds
10.0 SRP073485 SRR3401780 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
10.0 SRP220476 SRR10072754 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.0 SRP357889 SRR17847300 Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
9.9 SRP136326 SRR6941661 Knock-down of phosphoserine phosphatase gene effects rather N- than S-metabolism in Arabidopsis thaliana
9.9 SRP162520 SRR7899141 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings.
9.8 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.8 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
9.8 SRP266469 SRR11954320 RNA sequencing reveals the genetic relationship between TOPPs and its regulatory subunit PP1R3 in Arabidopsis thaliana
9.8 SRP108336 SRR5631429 Genome-wide gene expression profile from Arabidopsis epiRILs, epiHybrids and Colombia wild type
9.8 SRP073485 SRR3401779 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
9.8 SRP162520 SRR7899142 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings.
9.8 SRP091641 SRR4426940 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.7 SRP148699 SRR7204078 An essential role for Abscisic acid in the regulation of xylem fibre differentiation
9.7 SRP090913 SRR8185444 WallOmics
9.7 ERP015521 ERR1406281 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
9.7 SRP098795 SRR5227416 RNA-seq data over Arabidopsis thaliana germination
9.7 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
9.7 SRP060410 SRR2088039 Photomorphogenesis of Arabidopsis seedlings is accompanied by complex alternative splicing alterations
9.7 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.7 SRP277946 SRR12470064 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.7 SRP277946 SRR12470195 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP091641 SRR4426369 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.6 SRP098795 SRR5227417 RNA-seq data over Arabidopsis thaliana germination
9.6 SRP090458 SRR4295841 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
9.6 SRP311688 SRR14037521 Effect of blocking ABA-signaling in different tissues on transcriptomic changes induced by ABA-treatment
9.6 SRP073485 SRR3401784 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
9.6 SRP150771 SRR7357981 RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
9.6 SRP028855 SRR953028 Arabidopsis thaliana Transcriptome or Gene expression
9.6 SRP098795 SRR5227415 RNA-seq data over Arabidopsis thaliana germination
9.6 SRP301115 SRR13397402 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
9.6 SRP073485 SRR3401785 Time course RNA-seq analysis of expression changes upon MLACC expression in Arabidopsis using a dexamethasone-inducible system which mirrors NLR activation
9.6 SRP277946 SRR12469968 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP267998 SRR12054296 RNAseq profiling of Col-0 and ex1ex2 mutant inoculated by fungus Alternaria alternata in Arabidopsis
9.6 SRP169564 SRR8206401 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
9.6 SRP279454 SRR12554223 RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis
9.6 SRP277946 SRR12469969 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP277946 SRR12470200 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP091641 SRR4426363 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.5 SRP125388 SRR6312367 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
9.5 SRP214607 SRR9682381 Lipophilic-Signals Lead to Organ-Specific Gene Expression Changes in Arabidopsis Seedlings
9.5 SRP365283 SRR18430925 Time-series RNAseq analysis following lateral root induction by gravistimulation
9.5 SRP227251 SRR10356218 Expression data from Arabidopsis thaliana Col-0 transformed with constructs misexpressing NAC052 transcription factor involving leaf morphology and anatomy
9.5 SRP277946 SRR12470190 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP091641 SRR4426365 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.5 SRP095347 SRR5120428 Genetic influences on gene expression in Arabidopsis thaliana
9.5 SRP277946 SRR12470189 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP114806 SRR5894525 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
9.5 SRP114806 SRR5894427 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
9.5 SRP277946 SRR12470183 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP285090 SRR12697055 Differential alteration of plant functions by homologous fungal candidate effectors
9.5 SRP091641 SRR4426361 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.5 SRP014482 SRR525133 Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
9.5 SRP137763 SRR6950016 The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq t vs t0]
9.4 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.4 SRP091641 SRR4426859 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.4 SRP220476 SRR10072757 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
9.4 SRP277946 SRR12470066 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.4 SRP154323 SRR7536246 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
9.4 SRP091641 SRR4426857 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.4 SRP176451 SRR8404539 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
9.4 SRP277946 SRR12470065 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.4 SRP154099 SRR7529159 Transcriptome analysis of Arabidopsis thaliana photoreceptor mutants impaired in UV and blue light signaling
9.4 SRP091641 SRR4426952 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.4 SRP371011 SRR18808288 Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
9.4 SRP090458 SRR4295913 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
9.4 SRP199175 SRR9107801 The Arabidopsis YDL1 suppresses singlet oxygen-induced gene expression changes
9.3 SRP267998 SRR12054335 RNAseq profiling of Col-0 and ex1ex2 mutant inoculated by fungus Alternaria alternata in Arabidopsis
9.3 SRP301115 SRR13397401 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
9.3 SRP091641 SRR4426761 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.3 SRP187477 SRR8667497 A role for PICKLE in the regulation of cold stress response in Arabidopsis
9.3 SRP090458 SRR4295910 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
9.3 SRP091641 SRR4426956 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.3 SRP091641 SRR4426359 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
9.3 SRP176451 SRR8404540 Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [RNA-seq]
The output is the 100 samples with the largest contribution to the coexpression.



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