Expression viewer

Gene annotation for AT5G05600

Platform:
Species ath
Symbol AT5G05600
Function* 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Entrez Gene ID* 830443
Other ID At5g05600




Expression pattern of AT5G05600



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
16.1 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
15.2 ERP123539 ERR4471741 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
14.9 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
14.2 SRP279501 SRR12558734 Leaf excision evokes an ultradian gene expression rhythm to prime de novo root regeneration
14.0 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.9 SRP102178 SRR5360825 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
13.4 SRP101641 SRR5330630 Chloroplast signalling gates thermotolerance in Arabidopsis
13.4 SRP277946 SRR12470209 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.4 SRP136817 SRR6919899 The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq gIR vs mock wt]
13.3 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.3 SRP277946 SRR12469969 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.2 SRP173766 SRR8335122 Genome-wide analysis of transcription and PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana
13.0 SRP007484 SRR309168 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
13.0 SRP102178 SRR5360868 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
12.8 SRP277946 SRR12469968 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.6 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.2 ERP106238 ERR2245590 PORCUPINE (PCP) regulates development in response to temperature variations through alternative splicing in Arabidopsis
12.2 SRP097877 SRR5205726 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
12.1 SRP285090 SRR12697055 Differential alteration of plant functions by homologous fungal candidate effectors
12.0 SRP056607 SRR1942867 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
12.0 SRP056607 SRR1942868 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
12.0 SRP331164 SRR15347020 The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis [RNA-seq]
12.0 SRP277946 SRR12469768 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.0 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
12.0 SRP260014 SRR11684907 PRC2-mediated H3K27me3 regulates iron homeostasis genes in the shoots of Arabidopsis thaliana
11.9 SRP097877 SRR5205785 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.9 SRP277946 SRR12469769 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.9 SRP007484 SRR309154 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
11.9 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.8 SRP277946 SRR12470114 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.8 SRP158306 SRR7694684 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.8 SRP158306 SRR7694984 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.7 SRP158306 SRR7694985 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.7 SRP063017 SRR2221840 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
11.7 SRP101641 SRR5330634 Chloroplast signalling gates thermotolerance in Arabidopsis
11.7 SRP212098 SRR9602181 Gene expression profiling study by RNA-seq for identifying genes associated with sound vibration in plant
11.7 SRP190896 SRR8850907 mRNA sequencing of msh1 memory line and non-memory (normal looking) sibling plants with isogenic Col-0 wild-type control in Arabidopsis
11.7 SRP103736 SRR5440897 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
11.6 SRP158306 SRR7694685 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.6 SRP238608 SRR10760433 Gene expression profiling (RNA-seq) in wild-type Arabidopsis seedlings in response to heat acclimation and heat shock
11.6 SRP158306 SRR7694686 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.6 SRP056601 SRR1947749 Arabidopsis thaliana Transcriptome or Gene expression
11.6 SRP057258 SRR1976486 BCAA catabolic mutants in prolonged darkness
11.5 SRP158306 SRR7694986 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.5 SRP279454 SRR12554223 RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis
11.5 SRP112501 SRR5831024 Combining chemical and genetic approaches to increase drought resistance in plants
11.5 SRP041308 SRR1257405 Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis
11.5 SRP218723 SRR9995082 Plant 22-nt siRNAs mediate translational repression and stress adaptation
11.5 SRP166137 SRR8078941 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
11.5 SRP218723 SRR9995083 Plant 22-nt siRNAs mediate translational repression and stress adaptation
11.5 SRP277946 SRR12469770 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.5 SRP114806 SRR5894654 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
11.5 SRP158306 SRR7694993 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.5 SRP051393 SRR1726976 RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants
11.5 SRP095390 SRR5121376 Induced one gene overexpression and check the transcriptional expression
11.5 SRP017386 SRR627661 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
11.5 SRP173766 SRR8335123 Genome-wide analysis of transcription and PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana
11.5 SRP052276 SRR1760198 Arabidopsis thaliana Transcriptome or Gene expression
11.5 ERP122723 ERR4318757 RNA-seq of Arabidopsis thaliana leaves for three genotypes (Col-0 wild type, gsnor1-3, axe1-5/hda6) in low light and dark conditions
11.5 SRP166137 SRR8078959 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
11.4 SRP052276 SRR1760205 Arabidopsis thaliana Transcriptome or Gene expression
11.4 SRP158306 SRR7694692 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.4 SRP158306 SRR7694989 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.4 SRP277946 SRR12470075 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.4 SRP286047 SRR12762103 The impact of the genes BBX32 and HY5 on the high light - responsive transcriptome of Arabidopsis thaliana
11.4 SRP101641 SRR5330627 Chloroplast signalling gates thermotolerance in Arabidopsis
11.4 SRP218723 SRR9995084 Plant 22-nt siRNAs mediate translational repression and stress adaptation
11.4 SRP158306 SRR7694689 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.4 SRP158306 SRR7694987 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.4 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
11.4 SRP188810 SRR8749793 RNAseq of Arabidopsis wild-type (WT)-expressing aequorin and card1-2 mutant (WT-expressing aequorin background) in response to DMBQ or DMSO treatment at 0 hr, 0.5 hr, 1 hr and 6 hr
11.4 SRP277946 SRR12470074 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.4 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
11.4 SRP097877 SRR5205630 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.4 SRP095347 SRR5120428 Genetic influences on gene expression in Arabidopsis thaliana
11.4 SRP158306 SRR7694962 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.4 SRP158306 SRR7694992 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.4 SRP158306 SRR7694687 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.4 SRP093767 SRR5045331 Transcriptome analysis after knocking down class III HD ZIP transcription factors in SAM
11.4 SRP277946 SRR12470210 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.4 SRP158306 SRR7694983 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.4 SRP158306 SRR7694990 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.3 SRP331164 SRR15347022 The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis [RNA-seq]
11.3 SRP126574 SRR6369415 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
11.3 SRP158306 SRR7694694 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.3 SRP241907 SRR10883951 Molecular mechanisms of Enterobacter sp. SA187 induced thermotolerance in Arabidopsis thaliana
11.3 SRP277946 SRR12470180 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.3 SRP158306 SRR7694961 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.3 SRP097877 SRR5205643 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
11.3 SRP051764 SRR1744393 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F6 data)
11.3 SRP095347 SRR5120360 Genetic influences on gene expression in Arabidopsis thaliana
11.3 SRP255966 SRR11523461 Whole genome RNA-sequencing from roots of Arabidopsis thaliana wild-type and stop1 exposed to low pH, low phosphate (Pi), Aluminum and Iron excess conditions.
11.3 SRP090913 SRR8185442 WallOmics
11.3 SRP031847 SRR1015541 Natural Variation and Timing of Stress Responses Promote and Predict Heterosis
11.3 SRP279454 SRR12554222 RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis
11.3 SRP169564 SRR8206385 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
11.3 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
11.3 SRP357889 SRR17847300 Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
11.3 SRP158306 SRR7694991 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
11.3 SRP155742 SRR7620901 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
The output is the 100 samples with the largest contribution to the coexpression.



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