Expression viewer

Gene annotation for SEP1

Platform:
Species ath
Symbol SEP1
Function* K-box region and MADS-box transcription factor family protein
Entrez Gene ID* 831436
Other ID At5g15800




Expression pattern of SEP1



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
19.0 SRP100712 SRR5285818 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
12.5 SRP285902 SRR12747524 ­Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis
12.2 SRP100938 SRR5304527 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
12.2 SRP100938 SRR5304540 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
12.2 SRP100938 SRR5304718 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
12.2 SRP100938 SRR5304620 During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
11.2 SRP126574 SRR6369400 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
11.2 SRP126574 SRR6369444 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
11.2 SRP126574 SRR6369448 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
11.2 SRP126574 SRR6369487 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
11.2 SRP126574 SRR6369525 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
11.0 SRP279325 SRR12546082 Coordination of microbe-host homeostasis via a crosstalk with plant innate immunity
10.4 SRP219510 SRR10030460 RNA-seq analysis of D-tagatose-treated Arabidopsis thaliana inoculated with Hyaloperonospora arabidopsidis isolate Noco-2
9.8 SRP066432 SRR2925748 Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor, MONGOOSE1
9.8 SRP066432 SRR2925714 Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor, MONGOOSE1
9.6 SRP277943 SRR12469316 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST]
9.6 SRP277943 SRR12469281 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST]
8.9 SRP255966 SRR11523471 Whole genome RNA-sequencing from roots of Arabidopsis thaliana wild-type and stop1 exposed to low pH, low phosphate (Pi), Aluminum and Iron excess conditions.
8.9 SRP222258 SRR15209488 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
8.9 SRP222258 SRR15209498 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
8.8 SRP100064 SRR5262960 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
8.3 SRP126162 SRR6348178 Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis
8.2 SRP266133 SRR11934427 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
8.0 SRP219510 SRR10030457 RNA-seq analysis of D-tagatose-treated Arabidopsis thaliana inoculated with Hyaloperonospora arabidopsidis isolate Noco-2
7.9 SRP100064 SRR5262959 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
7.9 SRP100064 SRR5263020 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
7.7 SRP198083 SRR9045746 Role of cis-zeatin in root responses to phosphate starvation
7.6 SRP311690 SRR14037552 Transcriptomic changes upon ABA treatment dependent on VND transcription factors
7.4 SRP221269 SRR10095908 Salicylic Acid Suppresses Apical Hook Formation via NPR1-Mediated Repression of EIN3/EIL1 in Arabidopsis
7.4 SRP073487 SRR3401835 Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
7.3 SRP230790 SRR10502573 H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [RNA-seq]
7.3 SRP230790 SRR10502575 H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [RNA-seq]
7.3 SRP230790 SRR10502577 H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [RNA-seq]
7.2 SRP285868 SRR12746009 Transcriptional responses of wild-type and zin1 mutant Arabidopsis plants to infection with Pseudomonas syringae
7.0 SRP076862 SRR3707807 Ethylene induced phosphorylation of CBP20 is involved in root growth [RNA-seq]
7.0 SRP267137 SRR12005741 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
6.9 SRP288594 SRR12899050 Transcriptional response of A. thaliana Root and Shoot tissue to light stress and presence of microbial communities in myc2-3 and MYC2-Flag lines
6.9 SRP288594 SRR12899064 Transcriptional response of A. thaliana Root and Shoot tissue to light stress and presence of microbial communities in myc2-3 and MYC2-Flag lines
6.7 SRP234036 SRR10560315 Gene expression profile of Arabidopsis thaliana wild type and siz1-2 mutant during in vitro shoot regeneration on callus inducing media (CIM) and shoot inducing media (SIM)
6.7 SRP234036 SRR10560360 Gene expression profile of Arabidopsis thaliana wild type and siz1-2 mutant during in vitro shoot regeneration on callus inducing media (CIM) and shoot inducing media (SIM)
6.5 SRP104760 SRR5467230 Interactions between effector-triggered immunity (ETI) and pattern-triggered immunity (PTI) in an Arabidopsis dde2 ein2 pad4 sid2 mutant
6.5 SRP073711 SRR3418002 RNA-seq of abscisic acid-reponsive transcription factors
6.5 SRP073711 SRR3418012 RNA-seq of abscisic acid-reponsive transcription factors
6.5 SRP118384 SRR6055482 CPL4 is a suppressor of de novo shoot organogenesis from roots of Arabidopsis thaliana
6.5 SRP303743 SRR13575639 Arabidopsis thaliana Transcriptome for different potassium
6.5 SRP266133 SRR11934464 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
6.5 SRP266133 SRR11934588 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
6.5 SRP266133 SRR11934679 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
6.3 SRP187062 SRR8645826 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
6.3 SRP285380 SRR12712286 Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes
6.3 SRP159462 SRR7779219 Transcriptomic study of Arabidopsis roots overexpressing the brassinosteroid receptor BRL3, in control conditions and under severe drought
6.3 SRP126162 SRR6348158 Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis
6.3 SRP258689 SRR11614718 Prediction of Auxin-Ethylene Crosstalk Mediators Using Meta-Analysis of Hormone-Induced Transcriptome Data in Arabidopsis
6.2 SRP033661 SRR1046931 Root transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines
6.2 SRP033661 SRR1046933 Root transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines
6.2 SRP033661 SRR1046924 Root transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines
6.2 SRP357889 SRR17847286 Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
6.2 SRP100064 SRR5262958 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5262961 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5262962 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5262963 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5262965 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5263024 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5263095 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5263116 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5263119 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5263120 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5263122 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5263153 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP100064 SRR5263166 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
6.2 SRP063017 SRR2221835 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
6.2 SRP063017 SRR2221842 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
6.1 ERP119429 ERR3821797 Transcription profiling of Arabidopsis thaliana root parts in reaction to fungal (Laccaria bicolor) volatiles
6.1 SRP288038 SRR12867899 Transcriptome analysis of alternative splicing under heat stress condition in atcyp18-1 mutant compared to wild type of Arabidopsis
6.0 SRP267137 SRR12005728 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
6.0 SRP267137 SRR12005752 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
5.9 SRP073379 SRR3393590 Arabidopsis BIC1 inactivates CRY2 by suppressing the blue light-dependent cryptochrome dimerization
5.8 SRP188270 SRR8717638 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
5.7 SRP189792 SRR8800693 Role of AtMLKLs in response to powdery mildew fungus
5.7 SRP075455 SRR3547944 The Proteasome Stress Regulon is Controlled by a Pair of NAC Transcription Factors in Arabidopsis
5.7 SRP155742 SRR7620862 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
5.7 ERP116123 ERR3414714 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
5.6 SRP154322 SRR7536130 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
5.6 SRP154322 SRR7536142 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
5.6 SRP154322 SRR7536149 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
5.6 SRP154322 SRR7536159 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
5.6 SRP154322 SRR7536169 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
5.6 ERP018177 ERR1698203 Transcriptomes and differential gene expression at the Arabidopsis shoot meristem during flowering
5.6 SRP326522 SRR15015716 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
5.6 SRP326522 SRR15015717 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
5.6 SRP326522 SRR15015719 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
5.6 SRP164718 SRR7985406 Maternal to zygotic transition:A two-step process with two phases of ZGA occurs in zygote right after fertilization in Arabidopsis
5.6 SRP365415 SRR18441287 Transcriptome profiling of Arabidopsis roots upon lateral root induction in WT and TOR knock down [dataset1]
5.6 SRP187381 SRR8662229 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
5.6 SRP155742 SRR7620861 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
5.5 SRP365283 SRR18430928 Time-series RNAseq analysis following lateral root induction by gravistimulation
5.5 ERP116123 ERR3414596 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
5.5 ERP116123 ERR3414713 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
5.5 SRP334993 SRR15679198 Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes
5.4 SRP187062 SRR8645843 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
The output is the 100 samples with the largest contribution to the coexpression.



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