Expression viewer

Gene annotation for AT5G01880

Platform:
Species ath
Symbol AT5G01880
Function* RING/U-box superfamily protein
Entrez Gene ID* 831691
Other ID At5g01880




Expression pattern of AT5G01880



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
9.8 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.8 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
9.6 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
9.6 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.1 SRP103736 SRR5440785 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
9.0 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.0 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
9.0 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.9 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.9 SRP103736 SRR5440786 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
8.9 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
8.9 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.8 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.8 SRP277946 SRR12470189 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.8 SRP277946 SRR12469847 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.7 SRP051763 SRR1744360 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
8.7 ERP123539 ERR4471741 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
8.6 SRP056607 SRR1942841 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
8.6 SRP220476 SRR10072738 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
8.6 SRP139506 SRR6982864 Cell type identity determines transcriptomic immune responses in Arabidopsis thaliana roots
8.6 SRP051393 SRR1726976 RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants
8.6 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.5 SRP090458 SRR4295857 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
8.5 SRP277946 SRR12469767 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.5 SRP155742 SRR7620901 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
8.4 SRP051763 SRR1744361 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
8.4 SRP200395 SRR9200669 UVR8-mediated changes in gene expression in response to UV-B, compared to genes misexpressed in pif4pif5 mutants
8.4 SRP126574 SRR6369494 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
8.4 SRP187381 SRR8661953 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
8.4 SRP306752 SRR13724845 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_20]
8.3 SRP056607 SRR1942842 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
8.3 SRP195499 SRR9016802 Illumina Sequencing of Wild Type, fip37L, cpsf30-3 and cpsf30-1 mutant plants
8.3 SRP311610 SRR14028771 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
8.3 SRP187381 SRR8661943 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
8.3 SRP101641 SRR5330611 Chloroplast signalling gates thermotolerance in Arabidopsis
8.3 SRP097877 SRR5205694 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
8.3 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
8.2 SRP108535 SRR5640164 Exploring the link between ER stress and autophagy in Arabidopsis
8.2 SRP139506 SRR6982868 Cell type identity determines transcriptomic immune responses in Arabidopsis thaliana roots
8.2 SRP285902 SRR12747511 ­Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis
8.2 SRP311610 SRR14028770 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
8.2 SRP103817 SRR5444373 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
8.2 SRP187381 SRR8661948 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
8.2 SRP187381 SRR8661950 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
8.2 SRP189792 SRR8800760 Role of AtMLKLs in response to powdery mildew fungus
8.2 SRP311610 SRR14028768 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
8.2 SRP311610 SRR14028769 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
8.2 SRP199288 SRR9113094 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
8.1 SRP238086 SRR10733517 mRNA sequencing from Arabidopsis mutants and transgenic plants in the Col-0 accession
8.1 SRP187381 SRR8661952 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
8.1 SRP187381 SRR8661956 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
8.1 SRP097877 SRR5205617 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
8.1 SRP151817 SRR7465437 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
8.1 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.1 SRP277946 SRR12470202 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.1 SRP315323 SRR14272429 Agrobacterium VirE2 Protein Modulates Plant Gene Expression and Mediates Transformation from Its Location in the Cytoplasm
8.1 SRP187381 SRR8661955 Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L.
8.1 SRP103736 SRR5440784 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
8.1 SRP078926 SRR3931163 Arabidopsis thaliana Transcriptome or Gene expression
8.1 SRP327928 SRR15100992 Auxin requirements for a meristematic state in roots depend on a dual brassinosteroid function
8.0 SRP093972 SRR5057787 Transcriptome analysis after ectopically expressing REV in SAM epidermis
8.0 SRP007484 SRR309145 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
8.0 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.0 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.0 SRP021196 SRR1610494 RNA-Seq of single cells from the Arabidopsis root
8.0 SRP189792 SRR8800756 Role of AtMLKLs in response to powdery mildew fungus
8.0 SRP233656 SRR10555740 Arabidopsis QUANTIREX
8.0 ERP123522 ERR4470940 RNA-seq of a time series experiment of leaf 3 tissue (primordia / leaf blade) of Arabidopsis plants grown under EoD FR since day 6, since day 18 or under WL conditions.
8.0 SRP199288 SRR9113093 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
8.0 SRP151817 SRR7465422 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
8.0 SRP090913 SRR8185442 WallOmics
8.0 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
8.0 SRP153372 SRR7518768 Arabidopsis spliceosome factor SmD3-b modulates immunity to Pseudomonas syringae infection
8.0 SRP199288 SRR9113095 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
7.9 SRP277946 SRR12470200 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.9 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.9 SRP064782 SRR2658819 Arabidopsis thaliana circadian clock
7.9 SRP041308 SRR1257405 Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis
7.9 SRP136326 SRR6884908 Knock-down of phosphoserine phosphatase gene effects rather N- than S-metabolism in Arabidopsis thaliana
7.9 SRP136326 SRR6941664 Knock-down of phosphoserine phosphatase gene effects rather N- than S-metabolism in Arabidopsis thaliana
7.9 SRP277946 SRR12469848 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.9 SRP095347 SRR5120424 Genetic influences on gene expression in Arabidopsis thaliana
7.9 SRP267870 SRR12046060 Single-cell RNA-seq data of Arabidopsis root
7.9 SRP257291 SRR11568014 Gene expression in Arabidopsis expressing a Hyaloperonospora arabidopsidis effector
7.9 SRP059744 SRR2072717 Identification of mRNAs Regulated in Response to Transcriptional Activation of the Arabidopsis ABA INSENSITIVE GROWTH 1 (ABIG1) Transcription Factor cDNA
7.9 SRP200395 SRR9200670 UVR8-mediated changes in gene expression in response to UV-B, compared to genes misexpressed in pif4pif5 mutants
7.9 SRP189792 SRR8800758 Role of AtMLKLs in response to powdery mildew fungus
7.8 SRP007484 SRR309146 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
7.8 SRP301115 SRR13397393 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
7.8 SRP114806 SRR5894654 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
7.8 SRP119870 SRR6166399 Transcriptomic characterization of spl7 and Col-0 ecotypes of Arabidopsis reveals new aspects of Fe-Cu crosstalk
7.8 SRP135665 SRR6833099 Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
7.8 SRP277946 SRR12469854 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.8 SRP277946 SRR12470187 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.8 SRP103817 SRR5444371 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
7.8 SRP052858 SRR1773555 Transcriptome-wide identification of Arabidopsis messenger RNAs transported between tissues
7.8 SRP267870 SRR12046059 Single-cell RNA-seq data of Arabidopsis root
7.8 SRP151817 SRR7465423 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
7.8 SRP149670 SRR7252676 Effect of GA on PAC and PAO1 treated Arabidopsis seeds
7.8 SRP136812 SRR6919648 The SOG1 transcriptional activator and the MYB3R family of repressors control a complex gene network in response to DNA damage in Arabidopsis [RNA-seq DREMmodel]
The output is the 100 samples with the largest contribution to the coexpression.



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