Expression viewer

Gene annotation for SPDS3

Platform:
Species ath
Symbol SPDS3
Function* spermidine synthase 3
Entrez Gene ID* 835392
Other ID At5g53120




Expression pattern of SPDS3



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
12.4 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
11.8 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
11.6 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.2 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.0 SRP285090 SRR12697055 Differential alteration of plant functions by homologous fungal candidate effectors
10.8 ERP015521 ERR1406301 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
10.7 SRP277946 SRR12469766 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.7 SRP114806 SRR5894659 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.7 SRP103736 SRR5440785 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
10.7 SRP095347 SRR5120428 Genetic influences on gene expression in Arabidopsis thaliana
10.6 SRP255728 SRR11510194 Transcriptome analysis of EDS1 4h after Pst AvrRps4- triggered immunity
10.6 SRP097877 SRR5205644 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
10.6 SRP277946 SRR12469968 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.5 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
10.5 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
10.5 SRP091641 SRR4449327 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.5 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.5 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.5 SRP351690 SRR17281224 Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time [RNA-seq]
10.4 SRP276408 SRR12401353 Analysis of differential gene expression in mutant and overexpressing lines of DNE1
10.4 SRP056601 SRR1947747 Arabidopsis thaliana Transcriptome or Gene expression
10.4 SRP057258 SRR1976478 BCAA catabolic mutants in prolonged darkness
10.4 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 SRP052858 SRR1773556 Transcriptome-wide identification of Arabidopsis messenger RNAs transported between tissues
10.4 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.4 SRP220476 SRR10072751 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.4 SRP041308 SRR1257406 Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis
10.4 SRP091641 SRR4449321 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.4 SRP114806 SRR5894660 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.3 SRP114806 SRR5894639 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.3 SRP277946 SRR12469641 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 SRP282437 SRR12642229 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
10.3 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
10.3 SRP220476 SRR10072752 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.3 SRP220476 SRR10072747 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.3 SRP220476 SRR10072749 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.3 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 SRP029598 SRR978410 Arabidopsis thaliana Transcriptome under Salt Stress
10.3 SRP091641 SRR4449320 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.3 SRP173766 SRR8335143 Genome-wide analysis of transcription and PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana
10.3 SRP277946 SRR12470065 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.3 SRP220476 SRR10072750 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.3 SRP189792 SRR8800760 Role of AtMLKLs in response to powdery mildew fungus
10.2 SRP201761 SRR9320303 Time course of the Arabidopsis root stem cells
10.2 SRP149815 SRR7265981 Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity
10.2 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
10.2 SRP277946 SRR12469969 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.2 SRP193460 SRR8944890 Selective egg cell polyspermy bypasses the triploid block
10.2 SRP237340 SRR10677246 MYB30 orchestras ROS wave-triggered systemic transcriptomic responses and plant acclimation in Arabidopsis
10.2 ERP110082 ERR2715065 Arabidopsis requires PECTINACETYLESTERASE 9 for constitutive but not induced defenses against Myzus persicae aphids
10.2 SRP007484 SRR309148 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
10.2 SRP279325 SRR12546054 Coordination of microbe-host homeostasis via a crosstalk with plant innate immunity
10.2 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
10.2 SRP193460 SRR8944889 Selective egg cell polyspermy bypasses the triploid block
10.2 SRP370448 SRR18767860 Arabidopsis thaliana Transcriptome or Gene expression
10.2 SRP007484 SRR309147 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
10.2 SRP193460 SRR8944888 Selective egg cell polyspermy bypasses the triploid block
10.2 SRP267870 SRR12046060 Single-cell RNA-seq data of Arabidopsis root
10.1 SRP031847 SRR1015541 Natural Variation and Timing of Stress Responses Promote and Predict Heterosis
10.1 SRP010938 SRR446041 Arabidopsis thaliana strain:Columbia (Col-0) Transcriptome or Gene expression
10.1 SRP103736 SRR5440786 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
10.1 SRP267870 SRR12046059 Single-cell RNA-seq data of Arabidopsis root
10.1 SRP097877 SRR5205630 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
10.1 ERP110082 ERR2715066 Arabidopsis requires PECTINACETYLESTERASE 9 for constitutive but not induced defenses against Myzus persicae aphids
10.1 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 SRP193460 SRR8944887 Selective egg cell polyspermy bypasses the triploid block
10.1 SRP301115 SRR13397402 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
10.1 SRP051393 SRR1726976 RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants
10.1 SRP007484 SRR309146 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
10.1 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
10.1 SRP191092 SRR8859567 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a 185-members bacterial synthetic community under full and low phosphate conditions
10.1 SRP103736 SRR5440784 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
10.1 SRP277946 SRR12470200 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 SRP051763 SRR1744360 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
10.1 SRP220476 SRR10072748 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
10.1 SRP149815 SRR7266250 Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity
10.1 SRP277943 SRR12469289 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST]
10.1 SRP282437 SRR12642235 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
10.1 SRP222258 SRR15122126 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
10.0 SRP301115 SRR13397401 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
10.0 SRP169564 SRR8206401 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
10.0 SRP222555 SRR10148645 Circadian clock regulation of alternative splicing and alternative polyadenylation in Arabidopsis thaliana
10.0 SRP371011 SRR18808229 Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
10.0 SRP073711 SRR3418003 RNA-seq of abscisic acid-reponsive transcription factors
10.0 SRP189792 SRR8800758 Role of AtMLKLs in response to powdery mildew fungus
10.0 SRP311688 SRR14037517 Effect of blocking ABA-signaling in different tissues on transcriptomic changes induced by ABA-treatment
10.0 SRP301115 SRR13397397 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
10.0 ERP023227 ERR1990472 Establishment of photosynthesis through chloroplast development is controlled by two distinct regulatory phases
10.0 ERP116123 ERR3414879 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.0 ERP116123 ERR3414880 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.0 SRP082532 SRR4048217 WRKY transcription factors in early MAMP-triggered immunity (RNA-Seq)
10.0 ERP116123 ERR3414881 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.0 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
10.0 ERP116123 ERR3414882 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
10.0 SRP091641 SRR4426533 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
10.0 SRP151817 SRR7465473 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
10.0 SRP301115 SRR13397400 Title: Leaf transcriptomics of Catalan A. thaliana demes under alkaline and carbonated stress at 3h and 48 hours.
10.0 SRP251062 SRR11206322 Gene expression changes in response to UV-B and low R:FR vs low R:FR in wild-type,uvr8 and hfr1 mutants
10.0 SRP091641 SRR4426602 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
The output is the 100 samples with the largest contribution to the coexpression.



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