Expression viewer

Gene annotation for AT5G57655

Platform:
Species ath
Symbol AT5G57655
Function* xylose isomerase family protein
Entrez Gene ID* 835871
Other ID At5g57655




Expression pattern of AT5G57655



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
13.6 SRP112501 SRR5831044 Combining chemical and genetic approaches to increase drought resistance in plants
13.2 SRP114806 SRR5894654 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
13.2 SRP162520 SRR7899136 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings.
13.1 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
13.0 SRP071947 SRR3234398 Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I]
13.0 SRP277946 SRR12470059 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.9 SRP103736 SRR5440897 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
12.8 SRP282437 SRR12642283 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
12.8 SRP286390 SRR12773653 Transcriptome analysis of Arabidopsis thaliana and Vibrio vulnificus MO6-24/O by RNA-seq
12.8 SRP091641 SRR4426794 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.7 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
12.7 SRP114806 SRR5894725 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.7 SRP233656 SRR10555740 Arabidopsis QUANTIREX
12.7 SRP114806 SRR5894711 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.7 SRP136326 SRR6941661 Knock-down of phosphoserine phosphatase gene effects rather N- than S-metabolism in Arabidopsis thaliana
12.6 SRP091641 SRR4426534 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.6 SRP277946 SRR12470075 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.6 SRP188270 SRR8717653 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
12.6 SRP277946 SRR12470057 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.5 SRP255728 SRR11510194 Transcriptome analysis of EDS1 4h after Pst AvrRps4- triggered immunity
12.5 SRP371011 SRR18808277 Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
12.5 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
12.5 SRP091641 SRR4426788 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.5 SRP149815 SRR7265981 Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity
12.5 SRP220476 SRR10072749 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
12.5 SRP188270 SRR8717656 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
12.4 SRP220476 SRR10072747 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
12.4 SRP277946 SRR12470058 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.4 SRP277946 SRR12469967 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.4 SRP071212 SRR3207080 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type (Col), hda6, hda5, hda9, fld and fve mutants
12.4 SRP155742 SRR7620901 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
12.4 SRP282437 SRR12642285 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
12.4 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
12.3 SRP091641 SRR4426731 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.3 SRP114806 SRR5894698 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.3 SRP051513 SRR1734308 Alterations to hormone regulated defense and stress response networks contribute to the greater growth of Arabidopsis F1 hybrids
12.3 ERP116123 ERR3414914 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.3 SRP091641 SRR4426928 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.3 SRP090457 SRR4295774 RNA-seq of Arabidopsis thaliana seedlings treated with MeJA or flg22 under full and low phosphate conditions
12.3 ERP116123 ERR3414913 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.3 SRP103817 SRR5444371 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
12.3 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.3 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.3 SRP220476 SRR10072748 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
12.3 SRP149670 SRR7252675 Effect of GA on PAC and PAO1 treated Arabidopsis seeds
12.3 SRP051393 SRR1726976 RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants
12.3 SRP097690 SRR5197907 Tissue-Specific Transcriptomics Reveals Role of the Unfolded Protein Response in Maintaining Fertility upon Heat Stress in Arabidopsis
12.3 SRP277946 SRR12469847 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.3 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.2 SRP091641 SRR4426601 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.2 SRP189792 SRR8800693 Role of AtMLKLs in response to powdery mildew fungus
12.2 SRP187062 SRR8645803 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
12.2 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
12.2 SRP126574 SRR6369494 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
12.2 SRP070918 SRR3193398 Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2.
12.2 SRP187062 SRR8645802 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
12.2 SRP149937 SRR7274755 Global transcriptomic response to chilling temperature in Col-0 wild type and sig5-3 (SALK_141383C) mutant Arabidopsis plants.
12.2 SRP017386 SRR627674 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
12.2 ERP116123 ERR3414911 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.2 ERP116123 ERR3414912 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.2 SRP277946 SRR12469637 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.2 SRP078926 SRR3931163 Arabidopsis thaliana Transcriptome or Gene expression
12.2 SRP114806 SRR5894705 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.2 ERP116123 ERR3414896 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.2 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.2 SRP187062 SRR8645805 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
12.2 SRP103817 SRR5444372 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
12.2 ERP116123 ERR3414895 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
12.2 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
12.1 SRP261821 SRR11795792 Arabidopsis NRP switches off the PP6 phosphatase FyPP3 to repress auxin-mediated growth in response to abscisic acid
12.1 SRP229078 SRR10416613 Global transcriptomic analysis of Arabidopsis thaliana ecotype Columbia-0 subjected to magnesium deficiency
12.1 SRP315323 SRR14272429 Agrobacterium VirE2 Protein Modulates Plant Gene Expression and Mediates Transformation from Its Location in the Cytoplasm
12.1 SRP173766 SRR8335145 Genome-wide analysis of transcription and PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana
12.1 SRP149815 SRR7264726 Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity
12.1 SRP091641 SRR4426532 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.1 SRP297920 SRR13253075 Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
12.1 SRP103817 SRR5444373 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
12.1 SRP154323 SRR7536247 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
12.1 SRP114806 SRR5894687 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.1 SRP187062 SRR8645804 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
12.1 SRP114806 SRR5894726 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.1 SRP127000 SRR6388213 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0) and 1 day after culture (DAC) from 9-day-old, 12-day-old and 15-day-old Col-0 seedlings
12.1 SRP154323 SRR7536248 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
12.1 SRP153372 SRR7518768 Arabidopsis spliceosome factor SmD3-b modulates immunity to Pseudomonas syringae infection
12.1 SRP091641 SRR4426674 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
12.1 SRP277946 SRR12470011 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.1 SRP103817 SRR5444374 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
12.1 SRP253436 SRR11356187 Transcriptome profiling of Arabidopsis tac1 and lazy1 mutant shoot tips under normal and gravistimulated conditions
12.1 SRP187062 SRR8645808 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
12.1 SRP126574 SRR6369454 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
12.1 SRP154322 SRR7536160 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
12.0 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
12.0 SRP063017 SRR2221835 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
12.0 SRP108634 SRR5646720 Locus-specific control of the de novo DNA methylation pathway [mRNA-seq]
12.0 SRP154323 SRR7536246 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
12.0 SRP154323 SRR7536249 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
12.0 SRP277946 SRR12470074 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
12.0 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
12.0 SRP129034 SRR6470085 mRNA sequencing of msh1 memory line in Arabidopsis
12.0 SRP070918 SRR3193434 Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2.
The output is the 100 samples with the largest contribution to the coexpression.



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