Expression viewer

Gene annotation for AT1G16960

Platform:
Species ath
Symbol AT1G16960
Function* Ubiquitin domain-containing protein
Entrez Gene ID* 838267
Other ID At1g16960




Expression pattern of AT1G16960



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
13.2 SRP100064 SRR5263181 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
12.5 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
12.2 SRP100064 SRR5263185 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
11.4 SRP100064 SRR5263184 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
11.4 SRP100064 SRR5263186 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
11.1 SRP267137 SRR12005742 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
11.1 SRP267137 SRR12005746 ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
10.8 SRP100064 SRR5263180 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
10.6 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
10.1 SRP114806 SRR5894687 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.0 SRP100064 SRR5262973 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
10.0 SRP100064 SRR5263092 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
10.0 SRP100064 SRR5263095 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
10.0 SRP100064 SRR5263099 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
10.0 SRP100064 SRR5263182 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
10.0 SRP100064 SRR5263183 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
10.0 SRP100064 SRR5263187 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
9.8 ERP114064 ERR3185030 RNAseq analysis of Arabidopsis cell suspension culture treated with IAA, RN3 and RN4
9.5 SRP114806 SRR5894385 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
9.2 SRP097877 SRR5205694 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
9.1 SRP090458 SRR4295841 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
8.9 SRP309537 SRR13867531 RNAseq samples of CNQX treated Arabidopsis roots regenerating at different time points.
8.9 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.9 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
8.8 SRP164718 SRR7985406 Maternal to zygotic transition:A two-step process with two phases of ZGA occurs in zygote right after fertilization in Arabidopsis
8.8 SRP154322 SRR7536161 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
8.7 SRP100064 SRR5263101 Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
8.7 SRP285090 SRR12697055 Differential alteration of plant functions by homologous fungal candidate effectors
8.7 SRP103817 SRR5444476 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
8.6 SRP126156 SRR6347964 Equal parental contribution to the transcriptome is not equal control of embryogenesis
8.6 SRP114806 SRR5894445 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
8.5 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
8.5 ERP114064 ERR3185048 RNAseq analysis of Arabidopsis cell suspension culture treated with IAA, RN3 and RN4
8.5 SRP277946 SRR12470180 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.4 SRP235374 SRR10614257 LFY is pioneer transcription factor [RNA-seq]
8.4 SRP277946 SRR12470185 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.4 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
8.3 SRP191093 SRR8859580 RNA-seq of the roots of Arabidopsis thaliana plants growing in soil treated under different fertilization regimes.
8.3 SRP105272 SRR5482540 Cell type transcriptomic profile of the Arabidopsis root stem cell niche
8.3 SRP103817 SRR5444475 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
8.3 SRP149815 SRR7267228 Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity
8.2 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.2 SRP017386 SRR627674 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
8.2 SRP220476 SRR10072740 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
8.2 SRP327928 SRR15100977 Auxin requirements for a meristematic state in roots depend on a dual brassinosteroid function
8.2 SRP029598 SRR978410 Arabidopsis thaliana Transcriptome under Salt Stress
8.2 SRP095347 SRR5120428 Genetic influences on gene expression in Arabidopsis thaliana
8.1 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
8.1 SRP244078 SRR10953372 Conserved Arabidopsis response to oviposition and crude egg extract treatment
8.1 SRP277946 SRR12469854 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.1 SRP277946 SRR12470056 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.1 SRP014482 SRR525107 Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
8.1 SRP297673 SRR13242435 Transcriptome analysis of wild type and sweet1 seeds upon treatments during germination
8.0 SRP277946 SRR12469638 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.0 SRP277946 SRR12469868 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.0 SRP277946 SRR12470064 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.0 SRP277946 SRR12470189 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.0 SRP277946 SRR12470200 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
8.0 SRP220476 SRR10072739 Comparison of apical leaf halves of Arabidopsis thaliana PP2A-B´-mutants and wild type plants
8.0 SRP056607 SRR1942841 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
8.0 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
7.9 SRP277943 SRR12469315 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST]
7.9 SRP056607 SRR1942842 Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
7.9 SRP095347 SRR5120424 Genetic influences on gene expression in Arabidopsis thaliana
7.9 ERP015521 ERR1406301 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
7.9 SRP219435 SRR10027528 The LRX-RALF-FER cell wall integrity sensing module controls plant growth and salt stress responses by modulating multiple plant hormones
7.9 SRP188270 SRR8717653 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
7.9 SRP105272 SRR5482529 Cell type transcriptomic profile of the Arabidopsis root stem cell niche
7.9 SRP095347 SRR5120423 Genetic influences on gene expression in Arabidopsis thaliana
7.9 SRP222555 SRR10148648 Circadian clock regulation of alternative splicing and alternative polyadenylation in Arabidopsis thaliana
7.9 SRP114806 SRR5894721 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
7.9 SRP108634 SRR5646719 Locus-specific control of the de novo DNA methylation pathway [mRNA-seq]
7.8 SRP277946 SRR12470065 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.8 SRP126156 SRR6347977 Equal parental contribution to the transcriptome is not equal control of embryogenesis
7.8 SRP139506 SRR6982864 Cell type identity determines transcriptomic immune responses in Arabidopsis thaliana roots
7.8 SRP173766 SRR8335145 Genome-wide analysis of transcription and PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana
7.8 SRP361760 SRR18163179 The Dynamic Proteome in Arabidopsis Thaliana Early Embryogenesis
7.8 SRP095347 SRR5120422 Genetic influences on gene expression in Arabidopsis thaliana
7.8 SRP071947 SRR3234398 Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I]
7.8 SRP103817 SRR5444474 Signature of coevolution between determinants of defense and life span in Arabidopsis thaliana
7.8 SRP277946 SRR12470187 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.8 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
7.8 SRP185336 SRR8554916 Next Generation Sequencing of Arabidopsis seedlings upon Mock or GR244DO Transcriptomes
7.7 SRP313445 SRR14142046 A RALF-like peptide EaF82 derived from Epipremnum aureum inhibits pollen development in Arabidopsis and tobacco
7.7 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
7.7 SRP306752 SRR13724845 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_20]
7.7 ERP113389 ERR3079492 The effect of ?-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
7.7 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
7.7 SRP332285 SRR15427775 An Arabidopsis root phloem pole cell atlas reveals PINEAPPLE genes as transitioners to autotrophy [10x scRNA-seq]
7.7 SRP108336 SRR5631429 Genome-wide gene expression profile from Arabidopsis epiRILs, epiHybrids and Colombia wild type
7.7 SRP100712 SRR5286018 Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
7.7 SRP277946 SRR12470059 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.7 SRP277946 SRR12470066 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.7 SRP277946 SRR12470190 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.7 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
7.7 SRP154322 SRR7536159 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
7.7 SRP114806 SRR5894726 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
7.6 SRP327928 SRR15100980 Auxin requirements for a meristematic state in roots depend on a dual brassinosteroid function
7.6 SRP090458 SRR4295844 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
7.6 SRP274404 SRR12356823 Exchange of molecular and cellular information: a hybrid model that integrates stem cell divisions and key regulatory interactions [w5C6]
The output is the 100 samples with the largest contribution to the coexpression.



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