Expression viewer

Gene annotation for AT1G01660

Platform:
Species ath
Symbol AT1G01660
Function* RING/U-box superfamily protein
Entrez Gene ID* 839461
Other ID At1g01660




Expression pattern of AT1G01660



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
9.0 SRP297673 SRR13242435 Transcriptome analysis of wild type and sweet1 seeds upon treatments during germination
8.4 SRP307584 SRR13765847 RNA-seq of ?DS deletion vs +WT Complemented seeds
8.2 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
8.2 SRP136033 SRR6865163 AGO4 participates in germination during salinity
7.9 SRP288038 SRR12867896 Transcriptome analysis of alternative splicing under heat stress condition in atcyp18-1 mutant compared to wild type of Arabidopsis
7.9 SRP121654 SRR6223124 The COP9 Signalosome regulates seed germination by facilitating protein degradation of RGL2 and ABI5
7.6 SRP150997 SRR7405069 Calmodulin-binding transcription activator (CAMTA) 6 is a key regulator of Na+ homeostasis and salinity stress responses during early germination
7.6 SRP150997 SRR7405104 Calmodulin-binding transcription activator (CAMTA) 6 is a key regulator of Na+ homeostasis and salinity stress responses during early germination
7.6 SRP150997 SRR7421497 Calmodulin-binding transcription activator (CAMTA) 6 is a key regulator of Na+ homeostasis and salinity stress responses during early germination
7.6 SRP199288 SRR9113155 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
7.4 SRP103736 SRR5440842 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
7.3 SRP051665 SRR1738115 Translatome analyses of opposing tissue-specific brassinosteroid signals orchestrating root meristem differentiation
7.2 SRP199288 SRR9113095 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
7.2 SRP237340 SRR10677224 MYB30 orchestras ROS wave-triggered systemic transcriptomic responses and plant acclimation in Arabidopsis
7.1 SRP098795 SRR5227417 RNA-seq data over Arabidopsis thaliana germination
7.1 SRP238842 SRR10769012 Next Generation Sequencing Facilitates Quantitative Analysis of in 14-day-old wt, brm-1, brm-3, brip1, brip2, brip1 brip2, brip1 brip2 brm-3 and brip1 brip2 brm-1 seedlings.
7.1 SRP149670 SRR7252681 Effect of GA on PAC and PAO1 treated Arabidopsis seeds
7.1 SRP098795 SRR5227416 RNA-seq data over Arabidopsis thaliana germination
7.1 SRP324081 SRR14813586 ARATH-IN-OUT
7.1 SRP362867 SRR18254721 Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses
7.0 SRP234996 SRR10603595 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
7.0 SRP234996 SRR10603594 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
7.0 SRP199288 SRR9113156 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
7.0 SRP279325 SRR12546057 Coordination of microbe-host homeostasis via a crosstalk with plant innate immunity
7.0 SRP091641 SRR4426577 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
7.0 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
7.0 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
7.0 SRP244461 SRR10959655 CASPARIAN STRIP INTEGRITY FACTOR 2 (CIF2) peptide induces SCHENGEN3 (SGN3) receptor-kinase dependent transcriptional changes
6.9 SRP098795 SRR5227415 RNA-seq data over Arabidopsis thaliana germination
6.9 SRP132408 SRR6684455 Direct control of SPEECHLESS by PIF4 in the high temperature response of stomatal development
6.9 SRP222258 SRR15122078 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
6.9 SRP103736 SRR5440843 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
6.8 SRP136326 SRR6941661 Knock-down of phosphoserine phosphatase gene effects rather N- than S-metabolism in Arabidopsis thaliana
6.8 SRP090679 SRR4309593 Characterization of CAMTA mutant plants
6.8 SRP238086 SRR10733517 mRNA sequencing from Arabidopsis mutants and transgenic plants in the Col-0 accession
6.8 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
6.8 SRP187062 SRR8645820 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
6.8 SRP369624 SRR18718384 Strigolactone action in mitochondria triggers retrograde signaling for root growth modulation
6.8 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
6.8 SRP282437 SRR12642100 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
6.8 SRP264829 SRR11851625 effect of ethylene rna-seq-RNA-seq ± Ethylene
6.8 SRP075455 SRR3547944 The Proteasome Stress Regulon is Controlled by a Pair of NAC Transcription Factors in Arabidopsis
6.7 SRP091641 SRR4426597 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
6.7 SRP166137 SRR8078938 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
6.7 ERP123539 ERR4471740 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
6.7 SRP102178 SRR5360777 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
6.7 SRP165731 SRR8054357 The embryonic transcriptome of Arabidopsis thaliana
6.7 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
6.7 SRP018266 SRR653558 Genome-wide analysis of LINK1 and LINK2 effects on the Arabidopsis transcriptome
6.7 ERP002233 ERR229834 Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root
6.7 SRP297585 SRR13239290 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
6.7 SRP101965 SRR5346192 Salicylic acid-dependent and -independent transcriptome changes in response to methyl-erythritol cyclodiphosphate accumulation
6.7 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
6.7 SRP090458 SRR4295952 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
6.6 SRP117360 SRR6030908 The Arabidopsis transcription factor TCP5 during petal and inflorescence development
6.6 SRP267870 SRR12046120 Single-cell RNA-seq data of Arabidopsis root
6.6 SRP199288 SRR9113096 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
6.6 SRP103736 SRR5440853 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
6.6 SRP370448 SRR18767860 Arabidopsis thaliana Transcriptome or Gene expression
6.6 SRP372716 SRR18963419 Interpreting gene co-regulation and metabolic profiling in the unique starch metabolism of Arabidopsis dpe2/phs1 mutant reveals insights into control mechanism of the starch granule number
6.6 SRP279325 SRR12546056 Coordination of microbe-host homeostasis via a crosstalk with plant innate immunity
6.6 SRP267870 SRR12046119 Single-cell RNA-seq data of Arabidopsis root
6.6 SRP302122 SRR13450911 The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq]
6.6 SRP277946 SRR12470073 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
6.6 SRP114806 SRR5894447 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
6.6 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
6.6 SRP253507 SRR11359746 Time-lapse RNA-seq analysis to study transcriptional regulation by early signals in De Novo Root Regeneration in Arabidopsis
6.6 SRP282437 SRR12642102 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
6.6 SRP149670 SRR7252679 Effect of GA on PAC and PAO1 treated Arabidopsis seeds
6.5 SRP331164 SRR15347023 The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis [RNA-seq]
6.5 SRP191813 SRR8875225 Investigation of different gene expression of putative tt mutants under AIC condition using RNA-seq
6.5 SRP126574 SRR6369527 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
6.5 SRP091641 SRR4426608 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
6.5 SRP165975 SRR8069340 High temperature transcriptomes of mutants in HDA9, PIF4 and Col-0 wild type of young Arabidopsis seedlings
6.5 SRP187062 SRR8645819 Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
6.5 SRP365283 SRR18430919 Time-series RNAseq analysis following lateral root induction by gravistimulation
6.5 SRP114806 SRR5894390 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
6.5 SRP114806 SRR5894395 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
6.5 ERP123539 ERR4471742 EVOREPRO: RNA- seq of Arabidopsis thaliana pollen developmental stages for Ler and Col ecotypes
6.5 SRP188270 SRR8717653 Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
6.5 SRP193460 SRR8944863 Selective egg cell polyspermy bypasses the triploid block
6.5 SRP125057 SRR6294484 Genome-wide mapping of demethylase, REF6 binding targets and H3K27me3 marked regions as well as expression analysis in various Arabidopsis genetic backgrounds [RNA-seq]
6.5 SRP223015 SRR10166250 Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin [mature pollen]
6.5 SRP365283 SRR18430920 Time-series RNAseq analysis following lateral root induction by gravistimulation
6.5 SRP071947 SRR3234398 Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I]
6.5 SRP139506 SRR6982862 Cell type identity determines transcriptomic immune responses in Arabidopsis thaliana roots
6.4 SRP108261 SRR5627260 RNAseq data for Arabidopsis TF mutants during germination
6.4 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
6.4 SRP200395 SRR9200663 UVR8-mediated changes in gene expression in response to UV-B, compared to genes misexpressed in pif4pif5 mutants
6.4 SRP255728 SRR11510194 Transcriptome analysis of EDS1 4h after Pst AvrRps4- triggered immunity
6.4 SRP095010 SRR5100683 Regulatory inversion in NAC networks steers the timing of age-dependent cell death in plants [RNA-Seq]
6.4 SRP139506 SRR6982864 Cell type identity determines transcriptomic immune responses in Arabidopsis thaliana roots
6.4 SRP090459 SRR4296050 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
6.4 SRP073003 SRR3347443 Gene expression analysis (RNA-seq) of Arabidopsis thaliana roots in wild type and trm4b-1 mutants under control and oxidative stress conditions
6.4 SRP174146 SRR8361702 BLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana
6.4 SRP014482 SRR525107 Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
6.4 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
6.4 SRP318409 SRR14418073 Interplay between gene expression, histone modifications, and DNA methylation mediated by miR778 during beet cyst nematode parasitism of Arabidopsis [RNA-seq]
6.4 SRP222258 SRR15122077 A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
6.4 SRP097877 SRR5205617 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
The output is the 100 samples with the largest contribution to the coexpression.



The preparation time of this page was 0.2 [sec].