Expression viewer

Gene annotation for AT1G53190

Platform:
Species ath
Symbol AT1G53190
Function* RING/U-box superfamily protein
Entrez Gene ID* 841753
Other ID At1g53190




Expression pattern of AT1G53190



Normalized expression
(Base-2 logarithm)		 Experiment ID Sample ID Source Name in annotation
10.3 SRP266133 SRR11934683 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
10.3 SRP277946 SRR12470184 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.2 SRP044776 SRR1523884 High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade
10.2 SRP277946 SRR12470192 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.2 SRP151817 SRR7465450 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
10.1 SRP037984 SRR1170682 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
10.1 SRP277946 SRR12469632 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 SRP114806 SRR5894661 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
10.1 SRP277946 SRR12470188 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 SRP280005 SRR12583402 The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana
10.1 SRP103736 SRR5440842 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
10.1 SRP277946 SRR12470189 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 SRP277946 SRR12470193 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 SRP277946 SRR12470201 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.0 SRP103736 SRR5440841 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
10.0 SRP029957 SRR988015 Arabidopsis thaliana strain:Columbia-0 Transcriptome or Gene expression
10.0 SRP017386 SRR627642 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
10.0 SRP310860 SRR13977116 Spider mite egg extract modifies Arabidopsis response to future infestations
10.0 SRP285090 SRR12697065 Differential alteration of plant functions by homologous fungal candidate effectors
10.0 SRP277946 SRR12470191 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.0 SRP277946 SRR12470208 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.9 SRP112501 SRR5831044 Combining chemical and genetic approaches to increase drought resistance in plants
9.9 SRP151817 SRR7465414 Genome-wide identification of putative translation regulator cis-Natural Antisense Transcripts in Arabidopsis thaliana
9.9 SRP277946 SRR12470190 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.8 SRP189792 SRR8800692 Role of AtMLKLs in response to powdery mildew fungus
9.8 SRP311610 SRR14028738 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
9.8 SRP017386 SRR627641 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
9.8 SRP311610 SRR14028737 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
9.8 SRP311610 SRR14028736 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
9.8 SRP311610 SRR14028739 Auxin and ABA responsiveness in the root or the shoot of dark-grown Arabidopsis thaliana 5 day old seedlings in the aba2-3 or wild-type (Col-O) background
9.7 SRP351684 SRR17281133 Transcriptomic profile of FERONIA mutant treated with Aradopside
9.7 SRP051665 SRR1738115 Translatome analyses of opposing tissue-specific brassinosteroid signals orchestrating root meristem differentiation
9.7 SRP277946 SRR12470059 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.7 SRP097877 SRR5205617 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
9.7 ERP023227 ERR1990450 Establishment of photosynthesis through chloroplast development is controlled by two distinct regulatory phases
9.7 SRP051763 SRR1744361 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
9.6 SRP095347 SRR5120250 Genetic influences on gene expression in Arabidopsis thaliana
9.6 SRP251392 SRR11218908 Global transcriptional patterns in irr and wild-type plants
9.6 SRP154322 SRR7536158 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
9.6 SRP255728 SRR11510194 Transcriptome analysis of EDS1 4h after Pst AvrRps4- triggered immunity
9.6 SRP155742 SRR7620901 Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
9.6 SRP277946 SRR12469846 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP214585 SRR9681421 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
9.6 SRP266133 SRR11934487 Two unequally redundant 'helper' immune receptor families mediate Arabidopsis intracellular 'sensor' immune receptor functions
9.6 SRP191092 SRR8859567 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a 185-members bacterial synthetic community under full and low phosphate conditions
9.6 SRP114806 SRR5894654 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
9.6 SRP277946 SRR12470074 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP277946 SRR12470067 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP051393 SRR1726976 RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants
9.6 SRP044776 SRR1523883 High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade
9.6 SRP214585 SRR9681423 Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins
9.6 SRP277946 SRR12469848 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP248470 SRR11075169 A dynamic network reveals the novel characteristics of miRNA regulation over time in response to the ABA hormone in Arabidopsis (mRNA)
9.6 SRP277946 SRR12470200 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP095347 SRR5120424 Genetic influences on gene expression in Arabidopsis thaliana
9.6 SRP365283 SRR18430906 Time-series RNAseq analysis following lateral root induction by gravistimulation
9.6 ERP116123 ERR3414911 Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress
9.6 SRP154321 SRR7535963 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
9.6 SRP277946 SRR12469637 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.6 SRP103736 SRR5440785 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
9.6 SRP357889 SRR17847305 Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
9.6 ERP015521 ERR1406293 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
9.6 SRP051513 SRR1734308 Alterations to hormone regulated defense and stress response networks contribute to the greater growth of Arabidopsis F1 hybrids
9.5 SRP199288 SRR9113093 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
9.5 SRP277946 SRR12469860 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP132408 SRR6684450 Direct control of SPEECHLESS by PIF4 in the high temperature response of stomatal development
9.5 SRP277946 SRR12470056 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP169564 SRR8206401 Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
9.5 SRP238608 SRR10760420 Gene expression profiling (RNA-seq) in wild-type Arabidopsis seedlings in response to heat acclimation and heat shock
9.5 SRP052858 SRR1773555 Transcriptome-wide identification of Arabidopsis messenger RNAs transported between tissues
9.5 SRP201761 SRR9320303 Time course of the Arabidopsis root stem cells
9.5 SRP199288 SRR9113094 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
9.5 SRP277946 SRR12470194 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP194106 SRR8983767 Arabidopsis thaliana 35S:ANT-GR Transcriptome
9.5 SRP230790 SRR10502556 H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [RNA-seq]
9.5 SRP277946 SRR12469847 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.5 SRP158306 SRR7694733 Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq]
9.5 SRP187477 SRR8667497 A role for PICKLE in the regulation of cold stress response in Arabidopsis
9.5 SRP139789 SRR6989662 DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis [RNA-seq]
9.5 SRP193460 SRR8944852 Selective egg cell polyspermy bypasses the triploid block
9.5 SRP154099 SRR7529159 Transcriptome analysis of Arabidopsis thaliana photoreceptor mutants impaired in UV and blue light signaling
9.5 SRP357889 SRR17847303 Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
9.5 SRP103736 SRR5440786 Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
9.5 SRP101641 SRR5330575 Chloroplast signalling gates thermotolerance in Arabidopsis
9.4 SRP097877 SRR5205646 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
9.4 SRP154322 SRR7536159 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
9.4 SRP159259 SRR7774148 Diel and circadian gating of Arabidopsis thermotolerance and transcriptional response to heat stress.
9.4 ERP118500 ERR3668650 Transcription profiling of Arabidopsis thaliana leaves as reaction to caterpillar (Trichoplusia ni) feeding and fungi (Laccaria bicolor) infection of the roots
9.4 ERP015949 ERR1447079 Retrograde signalling during caused by heritable mitochondrial dysfunction is partly mediated by ANAC017 and improves plant performance.
9.4 SRP108336 SRR5631429 Genome-wide gene expression profile from Arabidopsis epiRILs, epiHybrids and Colombia wild type
9.4 SRP173235 SRR8310113 Mediator12 and 13 act as conditional anti-silencing factors in Arabidopsis [RNA-seq]
9.4 SRP095347 SRR5120423 Genetic influences on gene expression in Arabidopsis thaliana
9.4 SRP082532 SRR4048238 WRKY transcription factors in early MAMP-triggered immunity (RNA-Seq)
9.4 SRP044776 SRR1523898 High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade
9.4 SRP277946 SRR12470073 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
9.4 ERP123522 ERR4470940 RNA-seq of a time series experiment of leaf 3 tissue (primordia / leaf blade) of Arabidopsis plants grown under EoD FR since day 6, since day 18 or under WL conditions.
9.4 SRP136641 SRR6908911 Gene expression profiling (RNA-seq) in wild-type and bdrs triple mutant Arabidopsis seedlings in response to light or to a heat shock
9.4 SRP090458 SRR4295843 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
9.4 SRP090458 SRR4295857 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
9.4 SRP095347 SRR5120422 Genetic influences on gene expression in Arabidopsis thaliana
The output is the 100 samples with the largest contribution to the coexpression.



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