ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-e.2	AT2G46540	fiber
ath-u.5	AT2G46540	fiber
ath-r.7	AT2G46540	fiber
ath-m.9	AT2G46540	fiber
ath-m.4.bio	AT2G46540	fiber
ath-m.4.hor	AT2G46540	fiber
ath-m.4.lig	AT2G46540	fiber
ath-m.4.str	AT2G46540	fiber
ath-m.4.tis	AT2G46540	fiber
bra-r.6	103866457	uncharacterized LOC103866457
bra-r.6	103866282	uncharacterized LOC103866282
bna-r.1	106414370	uncharacterized LOC106414370
bna-r.1	106450500	uncharacterized LOC106450500
bna-r.1	BNAA04G27200D	uncharacterized BNAA04G27200D
ghi-r.1	107924664	uncharacterized LOC107924664
ghi-r.1	107948166	uncharacterized LOC107948166
ghi-r.1	107924739	uncharacterized LOC107924739
cit-r.1	102628104	hypothetical protein
cit-r.1	127901470	uncharacterized LOC127901470
gma-u.5	100795854	uncharacterized LOC100795854
gma-u.5	100785256	uncharacterized LOC100785256
ppo-u.5	7457406	uncharacterized LOC7457406
mtr-u.5	25499772	uncharacterized LOC25499772
sly-u.5	101255923	uncharacterized LOC101255923
sot-r.1	102587205	fiber protein Fb11
nta-r.1	107775240	uncharacterized LOC107775240
osa-u.5	4324256	uncharacterized LOC4324256
osa-u.5	4339476	uncharacterized LOC4339476
zma-u.5	118471917	uncharacterized LOC118471917
zma-u.5	100282278	uncharacterized LOC100282278
sbi-r.1	8061084	uncharacterized LOC8061084
bdi-r.1	100823876	uncharacterized LOC100823876
cre-r.1	CHLRE_12g537050v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	HDA

GO MF

Protein

NP_566079.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 2, cyto 2, cyto_nucl 2, pero 1, E.R._plas 1, plas 1, E.R. 1, cysk_nucl 1

(predict for NP_566079.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_566079.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-e.2 for AT2G46540	ath-u.5 for AT2G46540	ath-r.7 for AT2G46540	ath-m.9 for AT2G46540	ath-m.4.bio for AT2G46540	ath-m.4.hor for AT2G46540	ath-m.4.lig for AT2G46540	ath-m.4.str for AT2G46540	ath-m.4.tis for AT2G46540	bra-r.6 for 103866457	bra-r.6 for 103866282	bna-r.1 for 106414370	bna-r.1 for 106450500	bna-r.1 for BNAA04G27200D	ghi-r.1 for 107924664	ghi-r.1 for 107948166	ghi-r.1 for 107924739	cit-r.1 for 102628104	cit-r.1 for 127901470	gma-u.5 for 100795854	gma-u.5 for 100785256	ppo-u.5 for 7457406	mtr-u.5 for 25499772	sly-u.5 for 101255923	sot-r.1 for 102587205	nta-r.1 for 107775240	osa-u.5 for 4324256	osa-u.5 for 4339476	zma-u.5 for 118471917	zma-u.5 for 100282278	sbi-r.1 for 8061084	bdi-r.1 for 100823876	cre-r.1 for CHLRE_12g537050v5

Ortholog

Ortholog ID: 8919

Species

ath

bra

bna

ghi

cit

gma

ppo

mtr

sly

sot

nta

osa

zma

sbi

bdi

cre

Symbol

Function^*

fiber

uncharacterized LOC103866457

uncharacterized LOC103866282

uncharacterized LOC106414370

uncharacterized LOC106450500

uncharacterized BNAA04G27200D

uncharacterized LOC107924664

uncharacterized LOC107948166

uncharacterized LOC107924739

hypothetical protein

uncharacterized LOC127901470

uncharacterized LOC100795854

uncharacterized LOC100785256

uncharacterized LOC7457406

uncharacterized LOC25499772

uncharacterized LOC101255923

fiber protein Fb11

uncharacterized LOC107775240

uncharacterized LOC4324256

uncharacterized LOC4339476

uncharacterized LOC118471917

uncharacterized LOC100282278

uncharacterized LOC8061084

uncharacterized LOC100823876

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	6
bna03010	Ribosome	4
bna03018	RNA degradation	2
bna03040	Spliceosome	2
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	3
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	3
ghi00100	Steroid biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi04145	Phagosome	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7
cit00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7
cit00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	5
gma04145	Phagosome	3
gma04120	Ubiquitin mediated proteolysis	2
gma04148	Efferocytosis	2
gma04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	7
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	5
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	4
sot03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00540	Lipopolysaccharide biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	4
zma00230	Purine metabolism	2
zma00730	Thiamine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	3

Expression

Expression pattern

Entrez Gene ID^*

819266

103866457

103866282

106414370

106450500

106453231

107924664

107948166

107924739

102628104

127901470

100795854

100785256

7457406

25499772

101255923

102587205

107775240

4324256

4339476

118471917

100282278

8061084

100823876

5718474

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT2G46540 (ath-e.2 coexpression data)

Top 50 enrichment test to AT2G46540 (ath-e.2 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	ppo	mtr	sly	sot	nta	osa	zma	sbi	bdi	cre	tae	vvi	hvu
Paralog	9	2	3	3	2	2	1	1	1	1	1	2	2	1	1	1	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G46540 (ath-e.2 coexpression data)

Top 50 enrichment test to AT2G46540 (ath-e.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**