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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   AT2G47960   trafficking protein particle complex subunit-like protein 
 ath-u.5   AT2G47960   trafficking protein particle complex subunit-like protein 
 ath-r.7   AT2G47960   trafficking protein particle complex subunit-like protein 
 ath-m.9   AT2G47960   trafficking protein particle complex subunit-like protein 
 ath-m.4.bio   AT2G47960   trafficking protein particle complex subunit-like protein 
 ath-m.4.hor   AT2G47960   trafficking protein particle complex subunit-like protein 
 ath-m.4.lig   AT2G47960   trafficking protein particle complex subunit-like protein 
 ath-m.4.str   AT2G47960   trafficking protein particle complex subunit-like protein 
 ath-m.4.tis   AT2G47960   trafficking protein particle complex subunit-like protein 
 bra-r.6   103866337   trafficking protein particle complex subunit 13 
 bna-r.1   125602318   trafficking protein particle complex subunit 13-like 
 bna-r.1   106450402   trafficking protein particle complex subunit 13 
 bna-r.1   106394372   trafficking protein particle complex subunit 13-like 
 ghi-r.1   121208548   trafficking protein particle complex subunit 13 
 ghi-r.1   107962330   trafficking protein particle complex subunit 13 
 ghi-r.1   107937775   trafficking protein particle complex subunit 13 
 cit-r.1   102610735   uncharacterized LOC102610735 
 gma-u.5   100775887   trafficking protein particle complex subunit 13 
 gma-u.5   100787614   trafficking protein particle complex subunit 13 
 vvi-u.5   100256884   uncharacterized LOC100256884 
 ppo-u.5   7456811   uncharacterized LOC7456811 
 mtr-u.5   25493185   trafficking protein particle complex subunit 13 
 sly-u.5   101249022   uncharacterized LOC101249022 
 sot-r.1   102584796   trafficking protein particle complex subunit 13 
 nta-r.1   107763146   uncharacterized LOC107763146 
 nta-r.1   107790917   uncharacterized LOC107790917 
 nta-r.1   107814062   uncharacterized LOC107814062 
 osa-u.5   4349022   uncharacterized LOC4349022 
 zma-u.5   103643403   trafficking protein particle complex subunit 13 
 tae-r.2   123047365   trafficking protein particle complex subunit 13 
 tae-r.2   123122850   trafficking protein particle complex subunit 13 
 tae-r.2   123181238   trafficking protein particle complex subunit 13 
 hvu-r.1   123432937   trafficking protein particle complex subunit 13 
 sbi-r.1   8067094   trafficking protein particle complex subunit 13 
 bdi-r.1   100836572   trafficking protein particle complex subunit 13 

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Top 50 coexpressed genes to AT2G47960 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G47960 (ath-e.2 coexpression data)

CoexMap"819408"


athAT2G47960 | Entrez gene ID : 819408      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 3 1 2 1 1 1 1 1 3 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_566117.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 1,  mito 1,  vacu 1  (predict for NP_566117.1)
Subcellular
localization
TargetP
mito 4  (predict for NP_566117.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
AT2G47960
ath-u.5
for
AT2G47960
ath-r.7
for
AT2G47960
ath-m.9
for
AT2G47960
ath-m.4.bio
for
AT2G47960
ath-m.4.hor
for
AT2G47960
ath-m.4.lig
for
AT2G47960
ath-m.4.str
for
AT2G47960
ath-m.4.tis
for
AT2G47960
bra-r.6
for
103866337
bna-r.1
for
125602318
bna-r.1
for
106450402
bna-r.1
for
106394372
ghi-r.1
for
121208548
ghi-r.1
for
107962330
ghi-r.1
for
107937775
cit-r.1
for
102610735
gma-u.5
for
100775887
gma-u.5
for
100787614
vvi-u.5
for
100256884
ppo-u.5
for
7456811
mtr-u.5
for
25493185
sly-u.5
for
101249022
sot-r.1
for
102584796
nta-r.1
for
107763146
nta-r.1
for
107790917
nta-r.1
for
107814062
osa-u.5
for
4349022
zma-u.5
for
103643403
tae-r.2
for
123047365
tae-r.2
for
123122850
tae-r.2
for
123181238
hvu-r.1
for
123432937
sbi-r.1
for
8067094
bdi-r.1
for
100836572


Ortholog ID: 7974
Species ath bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT2G47960 LOC103866337 LOC125602318 LOC106450402 LOC106394372 LOC107962330 LOC107925260 LOC107901718 LOC102610735 LOC100775887 LOC100787614 LOC100256884 LOC7456811 LOC25493185 LOC101249022 LOC102584796 LOC107763146 LOC107790917 LOC107814062 LOC4349022 LOC103643403 LOC123047365 LOC123122850 LOC123181238 LOC123432937 LOC8067094 LOC100836572
Function* trafficking protein particle complex subunit-like protein trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13-like trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13-like trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13 uncharacterized LOC102610735 trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13 uncharacterized LOC100256884 uncharacterized LOC7456811 trafficking protein particle complex subunit 13 uncharacterized LOC101249022 trafficking protein particle complex subunit 13 uncharacterized LOC107763146 uncharacterized LOC107790917 uncharacterized LOC107814062 uncharacterized LOC4349022 trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13 trafficking protein particle complex subunit 13
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra04142 Lysosome 4
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 4
bna00513 Various types of N-glycan biosynthesis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 8
bna00510 N-Glycan biosynthesis 5
bna00513 Various types of N-glycan biosynthesis 5
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 7
bna00513 Various types of N-glycan biosynthesis 6
bna04141 Protein processing in endoplasmic reticulum 5
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot00510 N-Glycan biosynthesis 2
sot00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta04382 Cornified envelope formation 2
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 4
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 3
tae04142 Lysosome 3
tae04145 Phagosome 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 2
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
bdi04142 Lysosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819408 103866337 125602318 106450402 106394372 107962330 107925260 107901718 102610735 100775887 100787614 100256884 7456811 25493185 101249022 102584796 107763146 107790917 107814062 4349022 103643403 123047365 123122850 123181238 123432937 8067094 100836572
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