Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   REF6   relative of early flowering 6 
 ath-u.5   REF6   relative of early flowering 6 
 ath-r.7   REF6   relative of early flowering 6 
 bra-r.6   103873145   lysine-specific demethylase REF6 
 bna-r.1   111199047   lysine-specific demethylase REF6-like 
 bna-r.1   106428657   lysine-specific demethylase REF6 
 ghi-r.1   107931453   lysine-specific demethylase REF6 
 ghi-r.1   107953566   lysine-specific demethylase REF6 
 ghi-r.1   121206453   lysine-specific demethylase REF6 
 cit-r.1   102615321   lysine-specific demethylase REF6 
 gma-u.5   100810972   lysine-specific demethylase REF6 
 gma-u.5   100810437   lysine-specific demethylase REF6 
 gma-u.5   100775813   lysine-specific demethylase JMJ705 
 vvi-u.5   100241632   lysine-specific demethylase REF6 
 ppo-u.5   7463086   lysine-specific demethylase REF6 
 ppo-u.5   7484447   lysine-specific demethylase REF6 
 mtr-u.5   25489508   lysine-specific demethylase REF6 
 sly-u.5   101257458   lysine-specific demethylase REF6 
 sot-r.1   102605874   lysine-specific demethylase REF6 
 nta-r.1   107761881   lysine-specific demethylase JMJ705 
 nta-r.1   107791367   lysine-specific demethylase JMJ705 
 osa-u.5   4324980   lysine-specific demethylase JMJ705-like 
 osa-u.5   4351981   lysine-specific demethylase JMJ705-like 
 zma-u.5   103640927   lysine-specific demethylase JMJ705 
 zma-u.5   103636385   lysine-specific demethylase JMJ705 
 tae-r.2   123062980   lysine-specific demethylase JMJ705 
 hvu-r.1   123399994   lysine-specific demethylase JMJ705-like 
 sbi-r.1   8155407   lysine-specific demethylase JMJ705 
 sbi-r.1   8056139   lysine-specific demethylase JMJ705 
 bdi-r.1   100839458   lysine-specific demethylase JMJ705 
 bdi-r.1   100836246   lysine-specific demethylase JMJ705 

close


Top 50 coexpressed genes to REF6 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to REF6 (ath-e.2 coexpression data)

CoexMap"824002"


athREF6 | Entrez gene ID : 824002      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 3 1 3 1 2 1 1 1 2 2 2 1 1 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0097355 [list] [network] protein localization to heterochromatin  (1 genes)  IDA  
GO:1904629 [list] [network] response to diterpene  (3 genes)  IEP IMP  
GO:0046345 [list] [network] abscisic acid catabolic process  (4 genes)  IMP  
GO:0048838 [list] [network] release of seed from dormancy  (7 genes)  IMP  
GO:0009612 [list] [network] response to mechanical stimulus  (28 genes)  IEP  
GO:0010104 [list] [network] regulation of ethylene-activated signaling pathway  (30 genes)  IGI IMP  
GO:0010182 [list] [network] sugar mediated signaling pathway  (40 genes)  TAS  
GO:0009873 [list] [network] ethylene-activated signaling pathway  (61 genes)  IMP  
GO:0010286 [list] [network] heat acclimation  (64 genes)  IEP  
GO:0009627 [list] [network] systemic acquired resistance  (68 genes)  IMP  
GO:0010628 [list] [network] positive regulation of gene expression  (71 genes)  IMP  
GO:0009741 [list] [network] response to brassinosteroid  (101 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IDA IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO:0009408 [list] [network] response to heat  (271 genes)  IEP IMP  
GO:0009826 [list] [network] unidimensional cell growth  (310 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO CC
GO:0031011 [list] [network] Ino80 complex  (16 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0071558 [list] [network] histone H3K27me2/H3K27me3 demethylase activity  (5 genes)  IDA IMP  
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IDA IMP  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001326576.1 [sequence] [blastp]
NP_680116.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  vacu 4,  chlo 1  (predict for NP_001326576.1)
nucl 10  (predict for NP_680116.2)
Subcellular
localization
TargetP
mito 2  (predict for NP_001326576.1)
other 5  (predict for NP_680116.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
REF6
ath-u.5
for
REF6
ath-r.7
for
REF6
bra-r.6
for
103873145
bna-r.1
for
111199047
bna-r.1
for
106428657
ghi-r.1
for
107931453
ghi-r.1
for
107953566
ghi-r.1
for
121206453
cit-r.1
for
102615321
gma-u.5
for
100810972
gma-u.5
for
100810437
gma-u.5
for
100775813
vvi-u.5
for
100241632
ppo-u.5
for
7463086
ppo-u.5
for
7484447
mtr-u.5
for
25489508
sly-u.5
for
101257458
sot-r.1
for
102605874
nta-r.1
for
107761881
nta-r.1
for
107791367
osa-u.5
for
4324980
osa-u.5
for
4351981
zma-u.5
for
103640927
zma-u.5
for
103636385
tae-r.2
for
123062980
hvu-r.1
for
123399994
sbi-r.1
for
8155407
sbi-r.1
for
8056139
bdi-r.1
for
100839458
bdi-r.1
for
100836246


Ortholog ID: 5322
Species ath bra bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae hvu sbi sbi bdi bdi
Symbol REF6 LOC103873145 LOC111199047 LOC106428657 LOC107931453 LOC107953566 LOC121206453 LOC102615321 LOC100810437 LOC100775813 LOC100775271 LOC100241632 LOC7463086 LOC7484447 LOC25489508 LOC101257458 LOC102605874 LOC107761881 LOC107791367 LOC4324980 LOC4351981 LOC103640927 LOC103636385 LOC123102786 LOC123110916 LOC123399994 LOC8155407 LOC8056139 LOC100839458 LOC100836246
Function* relative of early flowering 6 lysine-specific demethylase REF6 lysine-specific demethylase REF6-like lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase JMJ705 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase REF6 lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705-like lysine-specific demethylase JMJ705-like lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705-like lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705 lysine-specific demethylase JMJ705
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
ath00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00730 Thiamine metabolism 2
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00730 Thiamine metabolism 2
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03460 Fanconi anemia pathway 3
bdi03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824002 103873145 111199047 106428657 107931453 107953566 121206453 102615321 100810437 100775813 100775271 100241632 7463086 7484447 25489508 101257458 102605874 107761881 107791367 4324980 4351981 103640927 103636385 123102786 123110916 123399994 8155407 8056139 100839458 100836246
The preparation time of this page was 0.2 [sec].