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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   SFR6   sensitive to freezing 6 
 ath-u.5   SFR6   sensitive to freezing 6 
 ath-r.7   SFR6   sensitive to freezing 6 
 ath-m.9   SFR6   sensitive to freezing 6 
 ath-m.4.bio   SFR6   sensitive to freezing 6 
 ath-m.4.hor   SFR6   sensitive to freezing 6 
 ath-m.4.lig   SFR6   sensitive to freezing 6 
 ath-m.4.str   SFR6   sensitive to freezing 6 
 ath-m.4.tis   SFR6   sensitive to freezing 6 
 bra-r.6   103839801   mediator of RNA polymerase II transcription subunit 16 
 bna-r.1   106366873   mediator of RNA polymerase II transcription subunit 16-like 
 bna-r.1   106415388   mediator of RNA polymerase II transcription subunit 16 
 ghi-r.1   107925132   mediator of RNA polymerase II transcription subunit 16 
 ghi-r.1   107937762   mediator of RNA polymerase II transcription subunit 16 
 cit-r.1   102610216   mediator of RNA polymerase II transcription subunit 16 
 gma-u.5   100812938   mediator of RNA polymerase II transcription subunit 16 
 gma-u.5   100793949   mediator of RNA polymerase II transcription subunit 16 
 vvi-u.5   100265327   mediator of RNA polymerase II transcription subunit 16 
 ppo-u.5   18102996   mediator of RNA polymerase II transcription subunit 16 
 ppo-u.5   7490820   mediator of RNA polymerase II transcription subunit 16 
 ppo-u.5   7477418   mediator of RNA polymerase II transcription subunit 16 
 mtr-u.5   25493186   mediator of RNA polymerase II transcription subunit 16 
 sly-u.5   101267765   mediator of RNA polymerase II transcription subunit 16 
 sot-r.1   102600138   mediator of RNA polymerase II transcription subunit 16 
 nta-r.1   107804334   mediator of RNA polymerase II transcription subunit 16-like 
 nta-r.1   107761365   mediator of RNA polymerase II transcription subunit 16 
 osa-u.5   4349021   mediator of RNA polymerase II transcription subunit 16 
 zma-u.5   100216950   uncharacterized LOC100216950 
 tae-r.2   123181237   mediator of RNA polymerase II transcription subunit 16 
 tae-r.2   123122861   mediator of RNA polymerase II transcription subunit 16 
 tae-r.2   123047374   mediator of RNA polymerase II transcription subunit 16 
 hvu-r.1   123432911   mediator of RNA polymerase II transcription subunit 16 
 sbi-r.1   8065800   mediator of RNA polymerase II transcription subunit 16 
 bdi-r.1   100836267   mediator of RNA polymerase II transcription subunit 16 

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Top 50 coexpressed genes to SFR6 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SFR6 (ath-e.2 coexpression data)

CoexMap"825831"


athSFR6 | Entrez gene ID : 825831      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 3 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2001011 [list] [network] positive regulation of plant-type cell wall cellulose biosynthetic process  (1 genes)  IMP  
GO:1905499 [list] [network] trichome papilla formation  (3 genes)  IMP  
GO:1901672 [list] [network] positive regulation of systemic acquired resistance  (6 genes)  IMP  
GO:2001009 [list] [network] regulation of plant-type cell wall cellulose biosynthetic process  (6 genes)  IGI  
GO:1902066 [list] [network] regulation of cell wall pectin metabolic process  (7 genes)  IGI  
GO:0032922 [list] [network] circadian regulation of gene expression  (9 genes)  IMP  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (17 genes)  IDA  
GO:2000022 [list] [network] regulation of jasmonic acid mediated signaling pathway  (26 genes)  IMP  
GO:0010104 [list] [network] regulation of ethylene-activated signaling pathway  (30 genes)  IMP  
GO:0010091 [list] [network] trichome branching  (31 genes)  IMP  
GO:0048586 [list] [network] regulation of long-day photoperiodism, flowering  (34 genes)  IMP  
GO:0009631 [list] [network] cold acclimation  (60 genes)  IMP  
GO:0009734 [list] [network] auxin-activated signaling pathway  (65 genes)  IMP  
GO:0009738 [list] [network] abscisic acid-activated signaling pathway  (111 genes)  IDA  
GO:0006970 [list] [network] response to osmotic stress  (578 genes)  IMP  
GO:0048364 [list] [network] root development  (600 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA IMP  
GO CC
GO:0016592 [list] [network] mediator complex  (45 genes)  IDA IEA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (77 genes)  IDA  
Protein NP_001190676.1 [sequence] [blastp]
NP_001329057.1 [sequence] [blastp]
NP_192401.5 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001190676.1)
nucl 10  (predict for NP_001329057.1)
nucl 10  (predict for NP_192401.5)
Subcellular
localization
TargetP
other 9  (predict for NP_001190676.1)
other 9  (predict for NP_001329057.1)
other 9  (predict for NP_192401.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
SFR6
ath-u.5
for
SFR6
ath-r.7
for
SFR6
ath-m.9
for
SFR6
ath-m.4.bio
for
SFR6
ath-m.4.hor
for
SFR6
ath-m.4.lig
for
SFR6
ath-m.4.str
for
SFR6
ath-m.4.tis
for
SFR6
bra-r.6
for
103839801
bna-r.1
for
106366873
bna-r.1
for
106415388
ghi-r.1
for
107925132
ghi-r.1
for
107937762
cit-r.1
for
102610216
gma-u.5
for
100812938
gma-u.5
for
100793949
vvi-u.5
for
100265327
ppo-u.5
for
18102996
ppo-u.5
for
7490820
ppo-u.5
for
7477418
mtr-u.5
for
25493186
sly-u.5
for
101267765
sot-r.1
for
102600138
nta-r.1
for
107804334
nta-r.1
for
107761365
osa-u.5
for
4349021
zma-u.5
for
100216950
tae-r.2
for
123181237
tae-r.2
for
123122861
tae-r.2
for
123047374
hvu-r.1
for
123432911
sbi-r.1
for
8065800
bdi-r.1
for
100836267


Ortholog ID: 9557
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol SFR6 LOC103839801 LOC106366873 LOC106415388 LOC107925132 LOC107937762 LOC102610216 LOC100812938 LOC100793949 LOC100265327 LOC18102996 LOC7490820 LOC7477418 LOC25493186 LOC101267765 LOC102600138 LOC107804334 LOC107761365 LOC4349021 LOC100216950 LOC123181237 LOC123122861 LOC123047374 LOC123432911 LOC8065800 LOC100836267
Function* sensitive to freezing 6 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16-like mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16-like mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 uncharacterized LOC100216950 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16 mediator of RNA polymerase II transcription subunit 16
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 7
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 7
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03018 RNA degradation 2
cit04136 Autophagy - other 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae00310 Lysine degradation 3
tae03018 RNA degradation 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03013 Nucleocytoplasmic transport 3
tae04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825831 103839801 106366873 106415388 107925132 107937762 102610216 100812938 100793949 100265327 18102996 7490820 7477418 25493186 101267765 102600138 107804334 107761365 4349021 100216950 123181237 123122861 123047374 123432911 8065800 100836267
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