ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-e.2	AT5G20190	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	AT5G20190	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-r.7	AT5G20190	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	AT4G32340	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	AT1G80130	Tetratricopeptide repeat (TPR)-like superfamily protein
bra-r.6	103856432	uncharacterized LOC103856432
bra-r.6	103851057	uncharacterized LOC103851057
bra-r.6	103853281	uncharacterized LOC103853281
bna-r.1	106445945	uncharacterized LOC106445945
bna-r.1	106386703	uncharacterized LOC106386703
bna-r.1	BNAA02G04750D	uncharacterized BNAA02G04750D
ghi-r.1	107907331	uncharacterized LOC107907331
ghi-r.1	107906491	uncharacterized LOC107906491
ghi-r.1	107901304	uncharacterized LOC107901304
cit-r.1	102623473	uncharacterized LOC102623473
cit-r.1	102622775	hypothetical protein
cit-r.1	102608711	hypothetical protein
gma-u.5	100801597	uncharacterized LOC100801597
gma-u.5	100785496	uncharacterized LOC100785496
gma-u.5	100784254	uncharacterized LOC100784254
vvi-u.5	100243938	uncharacterized LOC100243938
vvi-u.5	100257716	uncharacterized LOC100257716
ppo-u.5	7459891	uncharacterized LOC7459891
ppo-u.5	7468636	uncharacterized LOC7468636
ppo-u.5	7474691	uncharacterized LOC7474691
mtr-u.5	25487954	uncharacterized LOC25487954
mtr-u.5	11441218	uncharacterized LOC11441218
sly-u.5	101251967	uncharacterized LOC101251967
sly-u.5	101262926	uncharacterized LOC101262926
sly-u.5	101248118	uncharacterized LOC101248118
sot-r.1	102599788	twist-related protein 1
sot-r.1	102605334	uncharacterized LOC102605334
sot-r.1	102597244	uncharacterized LOC102597244
nta-r.1	107783041	uncharacterized LOC107783041
nta-r.1	107807708	uncharacterized LOC107807708
nta-r.1	107825922	uncharacterized LOC107825922
osa-u.5	4341478	uncharacterized LOC4341478
osa-u.5	107277775	uncharacterized LOC107277775
zma-u.5	100383344	uncharacterized LOC100383344
tae-r.2	123169518	uncharacterized LOC123169518
tae-r.2	123148202	uncharacterized LOC123148202
tae-r.2	123155544	uncharacterized LOC123155544
hvu-r.1	123406937	uncharacterized LOC123406937
sbi-r.1	8065079	zinc finger protein AEBP2
bdi-r.1	100833225	uncharacterized LOC100833225

Top 50 coexpressed genes to AT5G20190 (ath-e.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G20190 (ath-e.2 coexpression data)

CoexMap"832142"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_197519.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 2, nucl 1, cyto 1, extr 1, cysk_nucl 1, nucl_plas 1

(predict for NP_197519.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_197519.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-e.2 for AT5G20190	ath-u.5 for AT5G20190	ath-r.7 for AT5G20190	ath-u.5 for AT4G32340	ath-u.5 for AT1G80130	bra-r.6 for 103856432	bra-r.6 for 103851057	bra-r.6 for 103853281	bna-r.1 for 106445945	bna-r.1 for 106386703	bna-r.1 for BNAA02G04750D	ghi-r.1 for 107907331	ghi-r.1 for 107906491	ghi-r.1 for 107901304	cit-r.1 for 102623473	cit-r.1 for 102622775	cit-r.1 for 102608711	gma-u.5 for 100801597	gma-u.5 for 100785496	gma-u.5 for 100784254	vvi-u.5 for 100243938	vvi-u.5 for 100257716	ppo-u.5 for 7459891	ppo-u.5 for 7468636	ppo-u.5 for 7474691	mtr-u.5 for 25487954	mtr-u.5 for 11441218	sly-u.5 for 101251967	sly-u.5 for 101262926	sly-u.5 for 101248118	sot-r.1 for 102599788	sot-r.1 for 102605334	sot-r.1 for 102597244	nta-r.1 for 107783041	nta-r.1 for 107807708	nta-r.1 for 107825922	osa-u.5 for 4341478	osa-u.5 for 107277775	zma-u.5 for 100383344	tae-r.2 for 123169518	tae-r.2 for 123148202	tae-r.2 for 123155544	hvu-r.1 for 123406937	sbi-r.1 for 8065079	bdi-r.1 for 100833225

Ortholog

Ortholog ID: 1811

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Tetratricopeptide repeat (TPR)-like superfamily protein

uncharacterized LOC103856432

uncharacterized LOC103851057

uncharacterized LOC103845701

uncharacterized LOC106386703

uncharacterized LOC106369070

uncharacterized BNAC01G06160D

uncharacterized LOC107907331

uncharacterized LOC107943211

uncharacterized LOC102623473

hypothetical protein

uncharacterized LOC100801597

uncharacterized LOC100785496

uncharacterized LOC100809777

uncharacterized LOC100243938

uncharacterized LOC100257716

uncharacterized LOC7459891

uncharacterized LOC7474691

uncharacterized LOC7470093

uncharacterized LOC25487954

uncharacterized LOC11441218

uncharacterized LOC101251967

uncharacterized LOC101262926

uncharacterized LOC101248118

twist-related protein 1

uncharacterized LOC102605334

uncharacterized LOC102597244

uncharacterized LOC107825922

uncharacterized LOC107830394

uncharacterized LOC107832184

uncharacterized LOC4341478

uncharacterized LOC107277775

uncharacterized LOC100383344

uncharacterized LOC123169518

uncharacterized LOC123148202

uncharacterized LOC123155544

uncharacterized LOC123406937

zinc finger protein AEBP2

uncharacterized LOC100833225

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	4
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	5
ath00520	Amino sugar and nucleotide sugar metabolism	2
ath01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	3
cit04626	Plant-pathogen interaction	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00591	Linoleic acid metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00591	Linoleic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00010	Glycolysis / Gluconeogenesis	4
vvi01200	Carbon metabolism	3
vvi01230	Biosynthesis of amino acids	3
vvi04712	Circadian rhythm - plant	3
vvi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	3
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly01250	Biosynthesis of nucleotide sugars	2
sly00500	Starch and sucrose metabolism	2
sly00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	3
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	5
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	7
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03015	mRNA surveillance pathway	2
nta04145	Phagosome	2
nta04517	IgSF CAM signaling	2
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	4
nta00909	Sesquiterpenoid and triterpenoid biosynthesis	4
nta00999	Biosynthesis of various plant secondary metabolites	4
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	7
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2
nta00460	Cyanoamino acid metabolism	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00730	Thiamine metabolism	4
tae01240	Biosynthesis of cofactors	4
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00730	Thiamine metabolism	5
tae01240	Biosynthesis of cofactors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

832142

829368

844353

103856432

103851057

103845701

106386703

106369070

106401071

107907331

107943211

102623473

102622775

102608711

100801597

100785496

100809777

100243938

100257716

7459891

7474691

7470093

25487954

11441218

101251967

101262926

101248118

102599788

102605334

102597244

107825922

107830394

107832184

4341478

107277775

100383344

123169518

123148202

123155544

123406937

8065079

100833225

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	3	3	2	3	2	3	3	3	2	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G20190 (ath-e.2 coexpression data)

Top 50 enrichment test to AT5G20190 (ath-e.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**