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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 ath-u.5   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 ath-r.7   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 ath-m.9   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 ath-m.4.bio   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 ath-m.4.hor   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 ath-m.4.lig   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 ath-m.4.str   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 ath-m.4.tis   HCF136   photosystem II stability/assembly factor, chloroplast (HCF136) 
 bra-r.6   103860525   photosystem II stability/assembly factor HCF136, chloroplastic 
 bna-r.1   111208780   photosystem II stability/assembly factor HCF136, chloroplastic 
 bna-r.1   106439899   photosystem II stability/assembly factor HCF136, chloroplastic 
 ghi-r.1   107886898   photosystem II stability/assembly factor HCF136, chloroplastic 
 ghi-r.1   107886826   photosystem II stability/assembly factor HCF136, chloroplastic 
 cit-r.1   102609414   photosystem II stability/assembly factor HCF136, chloroplastic 
 gma-u.5   100810566   photosystem II stability/assembly factor HCF136, chloroplastic 
 gma-u.5   100805606   photosystem II stability/assembly factor HCF136, chloroplastic 
 vvi-u.5   100254346   photosystem II stability/assembly factor HCF136, chloroplastic 
 ppo-u.5   7457185   photosystem II stability/assembly factor HCF136, chloroplastic 
 mtr-u.5   11439200   photosystem II stability/assembly factor HCF136, chloroplastic 
 sly-u.5   101259493   photosystem II stability/assembly factor HCF136, chloroplastic 
 sot-r.1   102603196   photosystem II stability/assembly factor HCF136, chloroplastic 
 nta-r.1   107830733   photosystem II stability/assembly factor HCF136, chloroplastic 
 nta-r.1   107787720   photosystem II stability/assembly factor HCF136, chloroplastic 
 osa-u.5   107275792   photosystem II stability/assembly factor HCF136, chloroplastic 
 zma-u.5   103629543   photosystem II stability/assembly factor HCF136, chloroplastic 
 tae-r.2   123161889   photosystem II stability/assembly factor HCF136, chloroplastic 
 tae-r.2   123168012   photosystem II stability/assembly factor HCF136, chloroplastic 
 tae-r.2   123149869   photosystem II stability/assembly factor HCF136, chloroplastic 
 hvu-r.1   123409041   photosystem II stability/assembly factor HCF136, chloroplastic 
 sbi-r.1   8069241   photosystem II stability/assembly factor HCF136, chloroplastic 
 bdi-r.1   100843413   photosystem II stability/assembly factor HCF136, chloroplastic 
 cre-r.1   CHLRE_06g273700v5   uncharacterized protein 

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Top 50 coexpressed genes to HCF136 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HCF136 (ath-e.2 coexpression data)

CoexMap"832376"


athHCF136 | Entrez gene ID : 832376      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0065003 [list] [network] protein-containing complex assembly  (254 genes)  IMP  
GO:0009657 [list] [network] plastid organization  (265 genes)  IMP  
GO CC
GO:0009533 [list] [network] chloroplast stromal thylakoid  (11 genes)  IDA  
GO:0009543 [list] [network] chloroplast thylakoid lumen  (52 genes)  HDA IDA  
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_001332175.1 [sequence] [blastp]
NP_197703.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 2,  E.R. 2  (predict for NP_001332175.1)
chlo 9  (predict for NP_197703.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001332175.1)
chlo 9  (predict for NP_197703.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
HCF136
ath-u.5
for
HCF136
ath-r.7
for
HCF136
ath-m.9
for
HCF136
ath-m.4.bio
for
HCF136
ath-m.4.hor
for
HCF136
ath-m.4.lig
for
HCF136
ath-m.4.str
for
HCF136
ath-m.4.tis
for
HCF136
bra-r.6
for
103860525
bna-r.1
for
111208780
bna-r.1
for
106439899
ghi-r.1
for
107886898
ghi-r.1
for
107886826
cit-r.1
for
102609414
gma-u.5
for
100810566
gma-u.5
for
100805606
vvi-u.5
for
100254346
ppo-u.5
for
7457185
mtr-u.5
for
11439200
sly-u.5
for
101259493
sot-r.1
for
102603196
nta-r.1
for
107830733
nta-r.1
for
107787720
osa-u.5
for
107275792
zma-u.5
for
103629543
tae-r.2
for
123161889
tae-r.2
for
123168012
tae-r.2
for
123149869
hvu-r.1
for
123409041
sbi-r.1
for
8069241
bdi-r.1
for
100843413
cre-r.1
for
CHLRE_06g273700v5


Ortholog ID: 10321
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol HCF136 LOC103860525 LOC111208780 LOC106439899 LOC107886898 LOC107886826 LOC102609414 LOC100810566 LOC100805606 LOC100254346 LOC7457185 LOC11439200 LOC101259493 LOC102603196 LOC107830733 LOC107787720 LOC107275792 LOC103629543 LOC123161889 LOC123168012 LOC123149869 LOC123409041 LOC8069241 LOC100843413 CHLRE_06g273700v5
Function* photosystem II stability/assembly factor, chloroplast (HCF136) photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic photosystem II stability/assembly factor HCF136, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 6
ath01200 Carbon metabolism 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
ghi00260 Glycine, serine and threonine metabolism 2
ghi00270 Cysteine and methionine metabolism 2
ghi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
ghi00260 Glycine, serine and threonine metabolism 2
ghi00270 Cysteine and methionine metabolism 2
ghi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 4
cit00710 Carbon fixation by Calvin cycle 3
cit03060 Protein export 2
cit03010 Ribosome 2
cit00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 11
vvi00630 Glyoxylate and dicarboxylate metabolism 6
vvi00710 Carbon fixation by Calvin cycle 6
vvi00260 Glycine, serine and threonine metabolism 5
vvi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00260 Glycine, serine and threonine metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
sly00970 Aminoacyl-tRNA biosynthesis 2
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta00860 Porphyrin metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
osa01200 Carbon metabolism 3
osa00710 Carbon fixation by Calvin cycle 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae00051 Fructose and mannose metabolism 2
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu00195 Photosynthesis 2
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 2
sbi00196 Photosynthesis - antenna proteins 2
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00620 Pyruvate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi01200 Carbon metabolism 2
bdi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832376 103860525 111208780 106439899 107886898 107886826 102609414 100810566 100805606 100254346 7457185 11439200 101259493 102603196 107830733 107787720 107275792 103629543 123161889 123168012 123149869 123409041 8069241 100843413 5721786
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