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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   AT5G27860   uncharacterized protein 
 ath-u.5   AT5G27860   uncharacterized protein 
 ath-r.7   AT5G27860   uncharacterized protein 
 bra-r.6   103874506   pre-mRNA-splicing factor CWC22 homolog 
 bna-r.1   106348695   probable ATP-dependent RNA helicase DDX23 
 bna-r.1   106407177   pre-mRNA-splicing factor CWC22 homolog 
 ghi-r.1   107899078   splicing regulatory glutamine/lysine-rich protein 1 
 ghi-r.1   107927166   protein FAM133 
 ghi-r.1   107894124   protein FAM133 
 cit-r.1   102627531   uncharacterized LOC102627531 
 gma-u.5   100500332   uncharacterized LOC100500332 
 gma-u.5   100811105   protein SREK1IP1 
 vvi-u.5   100244276   uncharacterized LOC100244276 
 ppo-u.5   18098641   uncharacterized LOC18098641 
 mtr-u.5   11431301   NF-kappa-B-activating protein 
 sly-u.5   101260273   uncharacterized LOC101260273 
 sot-r.1   102586243   probable splicing factor, arginine/serine-rich 7 
 nta-r.1   107829128   uncharacterized LOC107829128 
 nta-r.1   107759210   uncharacterized LOC107759210 
 osa-u.5   9271613   uncharacterized LOC9271613 
 zma-u.5   100286351   splicing factor, arginine/serine-rich 12 
 tae-r.2   123119784   peptidyl-prolyl cis-trans isomerase G 
 tae-r.2   123110794   arginine/serine-rich coiled-coil protein 2 
 tae-r.2   123102602   arginine/serine-rich coiled-coil protein 2 
 hvu-r.1   123452247   splicing regulatory glutamine/lysine-rich protein 1 
 sbi-r.1   8066346   splicing regulatory glutamine/lysine-rich protein 1 
 bdi-r.1   100842365   splicing regulatory glutamine/lysine-rich protein 1 

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Top 50 coexpressed genes to AT5G27860 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G27860 (ath-e.2 coexpression data)

CoexMap"832849"


athAT5G27860 | Entrez gene ID : 832849    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 3 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  IDA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (19 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (56 genes)  IDA  
Protein NP_001154743.1 [sequence] [blastp]
NP_198138.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  plas 1,  extr 1  (predict for NP_001154743.1)
nucl 9,  plas 1,  extr 1  (predict for NP_198138.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001154743.1)
chlo 9  (predict for NP_198138.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
AT5G27860
ath-u.5
for
AT5G27860
ath-r.7
for
AT5G27860
bra-r.6
for
103874506
bna-r.1
for
106348695
bna-r.1
for
106407177
ghi-r.1
for
107899078
ghi-r.1
for
107927166
ghi-r.1
for
107894124
cit-r.1
for
102627531
gma-u.5
for
100500332
gma-u.5
for
100811105
vvi-u.5
for
100244276
ppo-u.5
for
18098641
mtr-u.5
for
11431301
sly-u.5
for
101260273
sot-r.1
for
102586243
nta-r.1
for
107829128
nta-r.1
for
107759210
osa-u.5
for
9271613
zma-u.5
for
100286351
tae-r.2
for
123119784
tae-r.2
for
123110794
tae-r.2
for
123102602
hvu-r.1
for
123452247
sbi-r.1
for
8066346
bdi-r.1
for
100842365


Ortholog ID: 9697
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT5G27860 LOC103874506 LOC106348695 LOC106407177 LOC107927166 LOC107894124 LOC107887292 LOC102627531 LOC100500332 LOC100811105 LOC100244276 LOC18098641 LOC11431301 LOC101260273 LOC102586243 LOC107829128 LOC107759210 LOC9271613 LOC100286351 LOC123119784 LOC123110794 LOC123102602 LOC123452247 LOC8066346 LOC100842365
Function* uncharacterized protein pre-mRNA-splicing factor CWC22 homolog probable ATP-dependent RNA helicase DDX23 pre-mRNA-splicing factor CWC22 homolog protein FAM133 protein FAM133 protein FAM133 uncharacterized LOC102627531 uncharacterized LOC100500332 protein SREK1IP1 uncharacterized LOC100244276 uncharacterized LOC18098641 NF-kappa-B-activating protein uncharacterized LOC101260273 probable splicing factor, arginine/serine-rich 7 uncharacterized LOC107829128 uncharacterized LOC107759210 uncharacterized LOC9271613 splicing factor, arginine/serine-rich 12 peptidyl-prolyl cis-trans isomerase G arginine/serine-rich coiled-coil protein 2 arginine/serine-rich coiled-coil protein 2 splicing regulatory glutamine/lysine-rich protein 1 splicing regulatory glutamine/lysine-rich protein 1 splicing regulatory glutamine/lysine-rich protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04146 Peroxisome 2
nta04120 Ubiquitin mediated proteolysis 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 4
nta03040 Spliceosome 3
nta04146 Peroxisome 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832849 103874506 106348695 106407177 107927166 107894124 107887292 102627531 100500332 100811105 100244276 18098641 11431301 101260273 102586243 107829128 107759210 9271613 100286351 123119784 123110794 123102602 123452247 8066346 100842365
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