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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT5G54580   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103857036   organelle RRM domain-containing protein 2, mitochondrial 
 bra-r.6   103844911   organelle RRM domain-containing protein 2, mitochondrial 
 bna-r.1   106346020   organelle RRM domain-containing protein 2, mitochondrial-like 
 bna-r.1   111201419   organelle RRM domain-containing protein 2, mitochondrial 
 bna-r.1   106437266   organelle RRM domain-containing protein 2, mitochondrial 
 ghi-r.1   107948213   organelle RRM domain-containing protein 2, mitochondrial 
 ghi-r.1   107929694   organelle RRM domain-containing protein 2, mitochondrial 
 cit-r.1   102622555   organelle RRM domain-containing protein 2, mitochondrial 
 gma-u.5   100789351   organelle RRM domain-containing protein 2, mitochondrial 
 gma-u.5   100784609   organelle RRM domain-containing protein 2, mitochondrial 
 vvi-u.5   100253846   organelle RRM domain-containing protein 2, mitochondrial 
 vvi-u.5   100254516   organelle RRM domain-containing protein 2, mitochondrial 
 ppo-u.5   18095872   organelle RRM domain-containing protein 2, mitochondrial 
 ppo-u.5   7454395   organelle RRM domain-containing protein 2, mitochondrial 
 mtr-u.5   25492944   organelle RRM domain-containing protein 2, mitochondrial 
 sly-u.5   101264445   organelle RRM domain-containing protein 2, mitochondrial 
 sot-r.1   102579159   glycine-rich RNA-binding protein 3, mitochondrial 
 nta-r.1   107811130   organelle RRM domain-containing protein 2, mitochondrial 
 nta-r.1   107827529   organelle RRM domain-containing protein 2, mitochondrial-like 
 osa-u.5   4343540   organelle RRM domain-containing protein 2, mitochondrial 
 osa-u.5   4344631   organelle RRM domain-containing protein 2, mitochondrial 
 zma-u.5   100283837   uncharacterized LOC100283837 
 zma-u.5   100282339   ELAV-like protein 4 
 tae-r.2   123147426   organelle RRM domain-containing protein 2, mitochondrial 
 tae-r.2   123052453   organelle RRM domain-containing protein 2, mitochondrial 
 tae-r.2   123044589   organelle RRM domain-containing protein 2, mitochondrial 
 hvu-r.1   123408775   organelle RRM domain-containing protein 2, mitochondrial-like 
 hvu-r.1   123425755   organelle RRM domain-containing protein 2, mitochondrial 
 sbi-r.1   8076539   organelle RRM domain-containing protein 2, mitochondrial 
 sbi-r.1   8081727   organelle RRM domain-containing protein 2, mitochondrial 
 bdi-r.1   100825797   organelle RRM domain-containing protein 2, mitochondrial 
 bdi-r.1   100830645   organelle RRM domain-containing protein 2, mitochondrial 

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Top 50 coexpressed genes to AT5G54580 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G54580 (ath-e.2 coexpression data)

CoexMap"835546"


athAT5G54580 | Entrez gene ID : 835546    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 2 2 1 1 1 2 2 2 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0080156 [list] [network] mitochondrial mRNA modification  (26 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA IMP  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_200269.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for NP_200269.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_200269.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
AT5G54580
ath-u.5
for
AT5G54580
ath-r.7
for
AT5G54580
ath-m.9
for
AT5G54580
ath-m.4.bio
for
AT5G54580
ath-m.4.hor
for
AT5G54580
ath-m.4.lig
for
AT5G54580
ath-m.4.str
for
AT5G54580
ath-m.4.tis
for
AT5G54580
bra-r.6
for
103857036
bra-r.6
for
103844911
bna-r.1
for
106346020
bna-r.1
for
111201419
bna-r.1
for
106437266
ghi-r.1
for
107948213
ghi-r.1
for
107929694
cit-r.1
for
102622555
gma-u.5
for
100789351
gma-u.5
for
100784609
vvi-u.5
for
100253846
vvi-u.5
for
100254516
ppo-u.5
for
18095872
ppo-u.5
for
7454395
mtr-u.5
for
25492944
sly-u.5
for
101264445
sot-r.1
for
102579159
nta-r.1
for
107811130
nta-r.1
for
107827529
osa-u.5
for
4343540
osa-u.5
for
4344631
zma-u.5
for
100283837
zma-u.5
for
100282339
tae-r.2
for
123147426
tae-r.2
for
123052453
tae-r.2
for
123044589
hvu-r.1
for
123408775
hvu-r.1
for
123425755
sbi-r.1
for
8076539
sbi-r.1
for
8081727
bdi-r.1
for
100825797
bdi-r.1
for
100830645


Ortholog ID: 5861
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol AT5G54580 LOC103857036 LOC103844911 LOC106346020 LOC111201419 LOC106423119 LOC107948213 LOC107929694 LOC102622555 LOC100789351 LOC100784609 LOC100253846 LOC100254516 LOC18095872 LOC7454395 LOC25492944 LOC101264445 LOC102579159 LOC107811130 LOC107827529 LOC4343540 LOC4344631 LOC100283837 LOC100282339 LOC123147426 LOC123052453 LOC123188337 LOC123408775 LOC123425755 LOC8076539 LOC8081727 LOC100825797 LOC100830645
Function* RNA-binding (RRM/RBD/RNP motifs) family protein organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial-like organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial glycine-rich RNA-binding protein 3, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial-like organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial uncharacterized LOC100283837 ELAV-like protein 4 organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial-like organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial organelle RRM domain-containing protein 2, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00230 Purine metabolism 2
bra00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi03015 mRNA surveillance pathway 6
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi03015 mRNA surveillance pathway 6
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00590 Arachidonic acid metabolism 2
gma01232 Nucleotide metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03040 Spliceosome 2
gma03010 Ribosome 2
gma04626 Plant-pathogen interaction 2
gma00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi03040 Spliceosome 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03018 RNA degradation 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03040 Spliceosome 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03018 RNA degradation 5
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
tae03040 Spliceosome 6
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae03040 Spliceosome 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu01230 Biosynthesis of amino acids 2
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835546 103857036 103844911 106346020 111201419 106423119 107948213 107929694 102622555 100789351 100784609 100253846 100254516 18095872 7454395 25492944 101264445 102579159 107811130 107827529 4343540 4344631 100283837 100282339 123147426 123052453 123188337 123408775 123425755 8076539 8081727 100825797 100830645
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