ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-e.2	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
ath-u.5	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
ath-r.7	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
ath-m.9	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
ath-m.4.bio	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
ath-m.4.hor	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
ath-m.4.lig	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
ath-m.4.str	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
ath-m.4.tis	NdhN	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
bra-r.6	103856705	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
bna-r.1	106435673	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
bna-r.1	106387170	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
ghi-r.1	107918708	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
cit-r.1	102626230	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
gma-u.5	100777422	NAD(P)H-quinone oxidoreductase subunit N-like
gma-u.5	100811620	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
vvi-u.5	100248423	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
ppo-u.5	7464751	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
mtr-u.5	11411228	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
sly-u.5	101265478	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
sot-r.1	102588529	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
nta-r.1	107760205	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
nta-r.1	107811006	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic-like
osa-u.5	4324998	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
zma-u.5	100192546	uncharacterized LOC100192546
tae-r.2	123080142	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
tae-r.2	123071818	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
tae-r.2	123062951	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
hvu-r.1	123445128	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
sbi-r.1	8063139	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
bdi-r.1	100823243	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO:0010258 [list] [network] NADH dehydrogenase complex (plastoquinone) assembly	(8 genes)	IMP
GO:0050832 [list] [network] defense response to fungus	(282 genes)	IDA

GO CC

GO:0010598 [list] [network] NAD(P)H dehydrogenase complex (plastoquinone)	(13 genes)	TAS
GO:0009535 [list] [network] chloroplast thylakoid membrane	(314 genes)	HDA TAS
GO:0009941 [list] [network] chloroplast envelope	(585 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA
GO:0009536 [list] [network] plastid	(5443 genes)	HDA

GO MF

GO:0016655 [list] [network] oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

(12 genes)

IEA

Protein

NP_001119457.1 [sequence] [blastp]
NP_200634.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, cyto 2, plas 2, cyto_plas 2	(predict for NP_001119457.1)
chlo 8, plas 1	(predict for NP_200634.1)

Subcellular
localization
TargetP

chlo 6	(predict for NP_001119457.1)
chlo 6	(predict for NP_200634.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-e.2 for NdhN	ath-u.5 for NdhN	ath-r.7 for NdhN	ath-m.9 for NdhN	ath-m.4.bio for NdhN	ath-m.4.hor for NdhN	ath-m.4.lig for NdhN	ath-m.4.str for NdhN	ath-m.4.tis for NdhN	bra-r.6 for 103856705	bna-r.1 for 106435673	bna-r.1 for 106387170	ghi-r.1 for 107918708	cit-r.1 for 102626230	gma-u.5 for 100777422	gma-u.5 for 100811620	vvi-u.5 for 100248423	ppo-u.5 for 7464751	mtr-u.5 for 11411228	sly-u.5 for 101265478	sot-r.1 for 102588529	nta-r.1 for 107760205	nta-r.1 for 107811006	osa-u.5 for 4324998	zma-u.5 for 100192546	tae-r.2 for 123080142	tae-r.2 for 123071818	tae-r.2 for 123062951	hvu-r.1 for 123445128	sbi-r.1 for 8063139	bdi-r.1 for 100823243

Ortholog

Ortholog ID: 11451

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NdhN

Function^*

oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor

NAD(P)H-quinone oxidoreductase subunit N, chloroplastic

NAD(P)H-quinone oxidoreductase subunit N-like

NAD(P)H-quinone oxidoreductase subunit N, chloroplastic

NAD(P)H-quinone oxidoreductase subunit N, chloroplastic-like

NAD(P)H-quinone oxidoreductase subunit N, chloroplastic

uncharacterized LOC100192546

NAD(P)H-quinone oxidoreductase subunit N, chloroplastic

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	2
ath00630	Glyoxylate and dicarboxylate metabolism	2
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00710	Carbon fixation by Calvin cycle	3
bra01200	Carbon metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00630	Glyoxylate and dicarboxylate metabolism	9
bna01200	Carbon metabolism	9
bna00260	Glycine, serine and threonine metabolism	5
bna00670	One carbon pool by folate	5
bna00785	Lipoic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00630	Glyoxylate and dicarboxylate metabolism	9
bna01200	Carbon metabolism	9
bna00260	Glycine, serine and threonine metabolism	5
bna00670	One carbon pool by folate	5
bna00785	Lipoic acid metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00710	Carbon fixation by Calvin cycle	8
ghi01200	Carbon metabolism	8
ghi00195	Photosynthesis	6
ghi00630	Glyoxylate and dicarboxylate metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	4
vvi00710	Carbon fixation by Calvin cycle	3
vvi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00010	Glycolysis / Gluconeogenesis	2
ppo00710	Carbon fixation by Calvin cycle	2
ppo01200	Carbon metabolism	2
ppo00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	5
mtr00710	Carbon fixation by Calvin cycle	3
mtr00195	Photosynthesis	2
mtr00010	Glycolysis / Gluconeogenesis	2
mtr00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00195	Photosynthesis	3
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	5
sot00710	Carbon fixation by Calvin cycle	3
sot01200	Carbon metabolism	3
sot01230	Biosynthesis of amino acids	3
sot00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00710	Carbon fixation by Calvin cycle	4
nta01200	Carbon metabolism	4
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta00195	Photosynthesis	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	4
nta00710	Carbon fixation by Calvin cycle	2
nta01200	Carbon metabolism	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	6
osa00710	Carbon fixation by Calvin cycle	4
osa00195	Photosynthesis	3
osa00010	Glycolysis / Gluconeogenesis	2
osa00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	5
zma00030	Pentose phosphate pathway	4
zma00710	Carbon fixation by Calvin cycle	4
zma01230	Biosynthesis of amino acids	4
zma00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	3
hvu00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	3
bdi00630	Glyoxylate and dicarboxylate metabolism	2
bdi00710	Carbon fixation by Calvin cycle	2

Expression

Expression pattern

Entrez Gene ID^*

835938

103856705

106435673

106387170

107918708

102626230

100777422

100811620

100248423

7464751

11411228

101265478

102588529

107760205

107811006

4324998

100192546

123080142

123071818

123062951

123445128

8063139

100823243

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to NdhN (ath-e.2 coexpression data)

Top 50 enrichment test to NdhN (ath-e.2 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	2	1	1	2	1	1	1	1	1	2	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NdhN (ath-e.2 coexpression data)

Top 50 enrichment test to NdhN (ath-e.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**