ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-e.2	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-r.7	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.9	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.bio	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.hor	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.lig	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.str	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.tis	AT1G07280	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	AT2G29670	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	AT3G47080	Tetratricopeptide repeat (TPR)-like superfamily protein
bra-r.6	103864985	uncharacterized LOC103864985
bra-r.6	103843960	uncharacterized LOC103843960
bna-r.1	125603547	uncharacterized LOC125603547
bna-r.1	125578623	uncharacterized LOC125578623
bna-r.1	125575086	uncharacterized LOC125575086
ghi-r.1	107886041	uncharacterized LOC107886041
ghi-r.1	107928747	uncharacterized LOC107928747
ghi-r.1	107954195	uncharacterized LOC107954195
cit-r.1	102615835	uncharacterized LOC102615835
cit-r.1	102614483	uncharacterized LOC102614483
gma-u.5	100791735	uncharacterized LOC100791735
gma-u.5	100799508	uncharacterized LOC100799508
vvi-u.5	100253483	uncharacterized LOC100253483
ppo-u.5	7468573	uncharacterized LOC7468573
ppo-u.5	7478540	uncharacterized LOC7478540
mtr-u.5	25490845	uncharacterized LOC25490845
sly-u.5	101258865	uncharacterized LOC101258865
sot-r.1	102586166	uncharacterized LOC102586166
nta-r.1	107784835	uncharacterized LOC107784835
nta-r.1	107816898	uncharacterized LOC107816898
osa-u.5	4338950	uncharacterized LOC4338950
osa-u.5	4324827	uncharacterized LOC4324827
zma-u.5	100501832	uncharacterized LOC100501832
zma-u.5	100277843	uncharacterized LOC100277843
zma-u.5	100275415	uncharacterized LOC100275415
tae-r.2	123079795	uncharacterized LOC123079795
tae-r.2	123182198	uncharacterized LOC123182198
tae-r.2	123071455	uncharacterized LOC123071455
hvu-r.1	123444864	uncharacterized LOC123444864
hvu-r.1	123445924	uncharacterized LOC123445924
sbi-r.1	8061745	uncharacterized LOC8061745
sbi-r.1	8058931	uncharacterized LOC8058931
bdi-r.1	100833559	uncharacterized LOC100833559
bdi-r.1	100826542	uncharacterized LOC100826542

Top 50 coexpressed genes to AT1G07280 (ath-e.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G07280 (ath-e.2 coexpression data)

CoexMap"837239"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_001030984.1 [sequence] [blastp]
NP_001117242.1 [sequence] [blastp]
NP_001320416.1 [sequence] [blastp]
NP_172208.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for NP_001030984.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for NP_001117242.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for NP_001320416.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for NP_172208.2)

Subcellular
localization
TargetP

chlo 7	(predict for NP_001030984.1)
chlo 7	(predict for NP_001117242.1)
chlo 7	(predict for NP_001320416.1)
chlo 7	(predict for NP_172208.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-e.2 for AT1G07280	ath-u.5 for AT1G07280	ath-r.7 for AT1G07280	ath-m.9 for AT1G07280	ath-m.4.bio for AT1G07280	ath-m.4.hor for AT1G07280	ath-m.4.lig for AT1G07280	ath-m.4.str for AT1G07280	ath-m.4.tis for AT1G07280	ath-u.5 for AT2G29670	ath-u.5 for AT3G47080	bra-r.6 for 103864985	bra-r.6 for 103843960	bna-r.1 for 125603547	bna-r.1 for 125578623	bna-r.1 for 125575086	ghi-r.1 for 107886041	ghi-r.1 for 107928747	ghi-r.1 for 107954195	cit-r.1 for 102615835	cit-r.1 for 102614483	gma-u.5 for 100791735	gma-u.5 for 100799508	vvi-u.5 for 100253483	ppo-u.5 for 7468573	ppo-u.5 for 7478540	mtr-u.5 for 25490845	sly-u.5 for 101258865	sot-r.1 for 102586166	nta-r.1 for 107784835	nta-r.1 for 107816898	osa-u.5 for 4338950	osa-u.5 for 4324827	zma-u.5 for 100501832	zma-u.5 for 100277843	zma-u.5 for 100275415	tae-r.2 for 123079795	tae-r.2 for 123182198	tae-r.2 for 123071455	hvu-r.1 for 123444864	hvu-r.1 for 123445924	sbi-r.1 for 8061745	sbi-r.1 for 8058931	bdi-r.1 for 100833559	bdi-r.1 for 100826542

Ortholog

Ortholog ID: 2795

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Tetratricopeptide repeat (TPR)-like superfamily protein

uncharacterized LOC103843960

uncharacterized LOC103843466

uncharacterized LOC103868016

uncharacterized LOC106446930

uncharacterized LOC106400821

uncharacterized LOC106371352

uncharacterized LOC107886041

uncharacterized LOC107928747

uncharacterized LOC107954195

uncharacterized LOC102615835

uncharacterized LOC102614483

uncharacterized LOC100791735

uncharacterized LOC100799508

uncharacterized LOC100253483

uncharacterized LOC7468573

uncharacterized LOC7478540

uncharacterized LOC25490845

uncharacterized LOC101258865

uncharacterized LOC102586166

uncharacterized LOC107784835

uncharacterized LOC107816898

uncharacterized LOC4338950

uncharacterized LOC4324827

uncharacterized LOC100501832

uncharacterized LOC100277843

uncharacterized LOC100275225

uncharacterized LOC123079795

uncharacterized LOC123062635

uncharacterized LOC123058273

uncharacterized LOC123444864

uncharacterized LOC123445924

uncharacterized LOC8061745

uncharacterized LOC8058931

uncharacterized LOC100833559

uncharacterized LOC100826542

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	7
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00260	Glycine, serine and threonine metabolism	2
bna00350	Tyrosine metabolism	2
bna00360	Phenylalanine metabolism	2
bna00410	beta-Alanine metabolism	2
bna00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	8
bna00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	3
vvi01240	Biosynthesis of cofactors	2
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	5
sly00520	Amino sugar and nucleotide sugar metabolism	4
sly01250	Biosynthesis of nucleotide sugars	4
sly01240	Biosynthesis of cofactors	2
sly00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	10
sot00520	Amino sugar and nucleotide sugar metabolism	4
sot01250	Biosynthesis of nucleotide sugars	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	4
zma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	3
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00730	Thiamine metabolism	2
sbi01240	Biosynthesis of cofactors	2
sbi04712	Circadian rhythm - plant	2
sbi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00196	Photosynthesis - antenna proteins	2

Expression

Expression pattern

Entrez Gene ID^*

837239

817517

823861

103843960

103843466

103868016

106446930

106400821

106371352

107886041

107928747

107954195

102615835

102614483

100791735

100799508

100253483

7468573

7478540

25490845

101258865

102586166

107784835

107816898

4338950

4324827

100501832

100277843

100275225

123079795

123062635

123058273

123444864

123445924

8061745

8058931

100833559

100826542

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	3	3	2	2	1	2	1	1	1	2	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G07280 (ath-e.2 coexpression data)

Top 50 enrichment test to AT1G07280 (ath-e.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**