ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-e.2	RDR1	RNA-dependent RNA polymerase 1
ath-u.5	RDR1	RNA-dependent RNA polymerase 1
ath-r.7	RDR1	RNA-dependent RNA polymerase 1
ath-m.9	RDR1	RNA-dependent RNA polymerase 1
ath-m.4.bio	RDR1	RNA-dependent RNA polymerase 1
ath-m.4.hor	RDR1	RNA-dependent RNA polymerase 1
ath-m.4.lig	RDR1	RNA-dependent RNA polymerase 1
ath-m.4.str	RDR1	RNA-dependent RNA polymerase 1
ath-m.4.tis	RDR1	RNA-dependent RNA polymerase 1
bra-r.6	103872274	RNA-dependent RNA polymerase 1
bna-r.1	106400784	RNA-dependent RNA polymerase 1
bna-r.1	106346610	RNA-dependent RNA polymerase 1
ghi-r.1	107913503	RNA-dependent RNA polymerase 1-like
ghi-r.1	107920197	RNA-dependent RNA polymerase 1
cit-r.1	102606638	probable RNA-dependent RNA polymerase 1
cit-r.1	102611575	probable RNA-dependent RNA polymerase 1
cit-r.1	107174281	probable RNA-dependent RNA polymerase 1
gma-u.5	100811587	RNA-dependent RNA polymerase 1
vvi-u.5	100262811	probable RNA-dependent RNA polymerase 1
vvi-u.5	100268011	probable RNA-dependent RNA polymerase 1
ppo-u.5	7457809	RNA-dependent RNA polymerase 1
ppo-u.5	7459099	probable RNA-dependent RNA polymerase 1
ppo-u.5	7471427	probable RNA-dependent RNA polymerase 1
mtr-u.5	25482568	RNA-dependent RNA polymerase 1
mtr-u.5	25482564	RNA-dependent RNA polymerase 1
mtr-u.5	25482562	RNA-dependent RNA polymerase 1
sly-u.5	RdRP	RNA-directed RNA polymerase
sot-r.1	107059453	RNA-dependent RNA polymerase 1-like
sot-r.1	102578970	probable RNA-dependent RNA polymerase 1
sot-r.1	102578633	probable RNA-dependent RNA polymerase 1
nta-r.1	107827981	putative RNA-dependent RNA polymerase 1
nta-r.1	107788900	putative RNA-dependent RNA polymerase 1
osa-u.5	4330655	probable RNA-dependent RNA polymerase 1
zma-u.5	100502529	uncharacterized LOC100502529
tae-r.2	123128326	probable RNA-dependent RNA polymerase 1
tae-r.2	123128327	probable RNA-dependent RNA polymerase 1
tae-r.2	123138175	probable RNA-dependent RNA polymerase 1
hvu-r.1	123401198	probable RNA-dependent RNA polymerase 1
hvu-r.1	123403439	probable RNA-dependent RNA polymerase 1
sbi-r.1	8075746	probable RNA-dependent RNA polymerase 1
bdi-r.1	100844989	probable RNA-dependent RNA polymerase 1

Annotation

functional annotation

KEGG

GO BP

GO:0060148 [list] [network] positive regulation of post-transcriptional gene silencing	(2 genes)	IMP
GO:0010025 [list] [network] wax biosynthetic process	(30 genes)	IGI
GO:0030422 [list] [network] siRNA processing	(31 genes)	IMP
GO:0009615 [list] [network] response to virus	(102 genes)	IMP
GO:0009751 [list] [network] response to salicylic acid	(179 genes)	IEP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_172932.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 1, cyto 1, cyto_nucl 1

(predict for NP_172932.1)

Subcellular
localization
TargetP

other 8

(predict for NP_172932.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-e.2 for RDR1	ath-u.5 for RDR1	ath-r.7 for RDR1	ath-m.9 for RDR1	ath-m.4.bio for RDR1	ath-m.4.hor for RDR1	ath-m.4.lig for RDR1	ath-m.4.str for RDR1	ath-m.4.tis for RDR1	bra-r.6 for 103872274	bna-r.1 for 106400784	bna-r.1 for 106346610	ghi-r.1 for 107913503	ghi-r.1 for 107920197	cit-r.1 for 102606638	cit-r.1 for 102611575	cit-r.1 for 107174281	gma-u.5 for 100811587	vvi-u.5 for 100262811	vvi-u.5 for 100268011	ppo-u.5 for 7457809	ppo-u.5 for 7459099	ppo-u.5 for 7471427	mtr-u.5 for 25482568	mtr-u.5 for 25482564	mtr-u.5 for 25482562	sly-u.5 for RdRP	sot-r.1 for 107059453	sot-r.1 for 102578970	sot-r.1 for 102578633	nta-r.1 for 107827981	nta-r.1 for 107788900	osa-u.5 for 4330655	zma-u.5 for 100502529	tae-r.2 for 123128326	tae-r.2 for 123128327	tae-r.2 for 123138175	hvu-r.1 for 123401198	hvu-r.1 for 123403439	sbi-r.1 for 8075746	bdi-r.1 for 100844989

Ortholog

Ortholog ID: 5407

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

RDR1

RdRP

Function^*

RNA-dependent RNA polymerase 1

RNA-dependent RNA polymerase 1-like

RNA-dependent RNA polymerase 1