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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   APO1   APO RNA-binding protein (DUF794) 
 ath-u.5   APO1   APO RNA-binding protein (DUF794) 
 ath-r.7   APO1   APO RNA-binding protein (DUF794) 
 ath-m.9   APO1   APO RNA-binding protein (DUF794) 
 ath-m.4.bio   APO1   APO RNA-binding protein (DUF794) 
 ath-m.4.hor   APO1   APO RNA-binding protein (DUF794) 
 ath-m.4.lig   APO1   APO RNA-binding protein (DUF794) 
 ath-m.4.str   APO1   APO RNA-binding protein (DUF794) 
 ath-m.4.tis   APO1   APO RNA-binding protein (DUF794) 
 bra-r.6   103828686   APO protein 1, chloroplastic 
 bna-r.1   106450590   APO protein 1, chloroplastic 
 bna-r.1   111212757   APO protein 1, chloroplastic-like 
 ghi-r.1   107916587   APO protein 1, chloroplastic 
 ghi-r.1   107952853   APO protein 1, chloroplastic 
 cit-r.1   102626937   APO protein 1, chloroplastic 
 gma-u.5   100790841   APO protein 1, chloroplastic 
 gma-u.5   100815655   APO protein 1, chloroplastic 
 ppo-u.5   18105980   APO protein 1, chloroplastic 
 mtr-u.5   11445495   APO protein 1, chloroplastic 
 sly-u.5   101247645   APO protein 1, chloroplastic 
 sot-r.1   102604656   APO protein 1, chloroplastic-like 
 nta-r.1   107766123   APO protein 1, chloroplastic 
 nta-r.1   107824478   APO protein 1, chloroplastic-like 
 osa-u.5   4336989   APO protein 1, chloroplastic 
 zma-u.5   100383040   accumulation of photosystem one1 
 tae-r.2   123190175   APO protein 1, chloroplastic 
 tae-r.2   123046436   APO protein 1, chloroplastic 
 tae-r.2   123054278   APO protein 1, chloroplastic 
 sbi-r.1   110436524   APO protein 1, chloroplastic 
 bdi-r.1   100840691   APO protein 1, chloroplastic 

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Top 50 coexpressed genes to APO1 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to APO1 (ath-e.2 coexpression data)

CoexMap"842789"


athAPO1 | Entrez gene ID : 842789      
Species ath bra bna ghi cit gma ppo mtr sly sot nta osa zma tae sbi bdi cre vvi hvu
Paralog 9 1 2 2 1 2 1 1 1 1 2 1 1 3 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000373 [list] [network] Group II intron splicing  (28 genes)  IMP  
GO:0015979 [list] [network] photosynthesis  (154 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
Protein NP_001031234.1 [sequence] [blastp]
NP_176661.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 6,  E.R. 1,  cyto 1,  plas 1,  extr 1,  golg 1,  golg_plas 1,  cyto_plas 1  (predict for NP_001031234.1)
cyto 7,  chlo 1,  nucl 1,  plas 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for NP_176661.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001031234.1)
other 3,  mito 3  (predict for NP_176661.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
APO1
ath-u.5
for
APO1
ath-r.7
for
APO1
ath-m.9
for
APO1
ath-m.4.bio
for
APO1
ath-m.4.hor
for
APO1
ath-m.4.lig
for
APO1
ath-m.4.str
for
APO1
ath-m.4.tis
for
APO1
bra-r.6
for
103828686
bna-r.1
for
106450590
bna-r.1
for
111212757
ghi-r.1
for
107916587
ghi-r.1
for
107952853
cit-r.1
for
102626937
gma-u.5
for
100790841
gma-u.5
for
100815655
ppo-u.5
for
18105980
mtr-u.5
for
11445495
sly-u.5
for
101247645
sot-r.1
for
102604656
nta-r.1
for
107766123
nta-r.1
for
107824478
osa-u.5
for
4336989
zma-u.5
for
100383040
tae-r.2
for
123190175
tae-r.2
for
123046436
tae-r.2
for
123054278
sbi-r.1
for
110436524
bdi-r.1
for
100840691


Ortholog ID: 11793
Species ath bra bna bna ghi ghi cit gma gma ppo mtr sly sot nta nta osa zma tae tae tae sbi bdi
Symbol APO1 LOC103828686 LOC106450590 LOC111212757 LOC107916587 LOC107952853 LOC102626937 LOC100790841 LOC100815655 LOC18105980 LOC11445495 LOC101247645 LOC102604656 LOC107766123 LOC107824478 LOC4336989 LOC100383040 LOC123190175 LOC123046436 LOC123054278 LOC110436524 LOC100840691
Function* APO RNA-binding protein (DUF794) APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic-like APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic-like APO protein 1, chloroplastic APO protein 1, chloroplastic-like APO protein 1, chloroplastic accumulation of photosystem one1 APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic APO protein 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842789 103828686 106450590 111212757 107916587 107952853 102626937 100790841 100815655 18105980 11445495 101247645 102604656 107766123 107824478 4336989 100383040 123190175 123046436 123054278 110436524 100840691
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