ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	YAB5	plant-specific transcription factor YABBY family protein
ath-r.7	YAB5	plant-specific transcription factor YABBY family protein
ath-m.9	YAB5	plant-specific transcription factor YABBY family protein
ath-e.2	YAB5	plant-specific transcription factor YABBY family protein
ath-m.4.bio	YAB5	plant-specific transcription factor YABBY family protein
ath-m.4.hor	YAB5	plant-specific transcription factor YABBY family protein
ath-m.4.lig	YAB5	plant-specific transcription factor YABBY family protein
ath-m.4.str	YAB5	plant-specific transcription factor YABBY family protein
ath-m.4.tis	YAB5	plant-specific transcription factor YABBY family protein
ath-u.5	YAB2	Plant-specific transcription factor YABBY family protein
bra-r.6	103871588	putative axial regulator YABBY 2
bra-r.6	103858348	axial regulator YABBY 5
bna-r.1	106346333	putative axial regulator YABBY 2
bna-r.1	106377031	putative axial regulator YABBY 2
bna-r.1	106414914	putative axial regulator YABBY 2
ghi-r.1	107917100	axial regulator YABBY 5
ghi-r.1	107907328	axial regulator YABBY 5
ghi-r.1	107901565	putative axial regulator YABBY 2
cit-r.1	102624359	putative axial regulator YABBY 2
cit-r.1	102611194	axial regulator YABBY 5
gma-u.5	100785458	protein YABBY 12
gma-u.5	100500091	protein YABBY 11
gma-u.5	100500026	protein YABBY 9
vvi-u.5	100267536	axial regulator YABBY 5
vvi-u.5	100256505	putative axial regulator YABBY 2
vvi-u.5	100254328	axial regulator YABBY 5
ppo-u.5	7472992	axial regulator YABBY 5
ppo-u.5	7470091	axial regulator YABBY 5
mtr-u.5	11416031	putative axial regulator YABBY 2
mtr-u.5	11446936	putative axial regulator YABBY 2
sly-u.5	YABBY2	YABBY transcription factor
sly-u.5	YABBY5a	axial regulator YABBY5a
sly-u.5	YABBY5b	axial regulator YABBY5b
sot-r.1	102597616	axial regulator YABBY 5-like
sot-r.1	102605344	putative axial regulator YABBY 2
sot-r.1	102581691	putative axial regulator YABBY 2
nta-r.1	107763706	axial regulator YABBY 5
nta-r.1	107808962	axial regulator YABBY 5
nta-r.1	107785164	axial regulator YABBY 5-like
osa-u.5	4352818	protein YABBY 6-like
osa-u.5	4342449	protein YABBY 1-like
osa-u.5	4333584	protein YABBY 2-like
zma-u.5	118471992	protein YABBY 2-like
zma-u.5	103626034	protein YABBY 2
zma-u.5	100193531	uncharacterized LOC100193531
tae-r.2	100192178	protein YABBY 2
hvu-r.1	123452083	protein YABBY 2-like
sbi-r.1	8071489	protein YABBY 6
bdi-r.1	100827245	protein YABBY 2
bdi-r.1	100826382	protein YABBY 6
bdi-r.1	100837815	protein YABBY 1

Top 50 coexpressed genes to YAB5 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to YAB5 (ath-u.5 coexpression data)

CoexMap"817199"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:1902183 [list] [network] regulation of shoot apical meristem development	(10 genes)	IMP
GO:2000024 [list] [network] regulation of leaf development	(22 genes)	IMP
GO:0009944 [list] [network] polarity specification of adaxial/abaxial axis	(23 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	TAS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_850080.1 [sequence] [blastp]
NP_850081.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 4	(predict for NP_850080.1)
chlo 6, nucl 4	(predict for NP_850081.1)

Subcellular
localization
TargetP

scret 4	(predict for NP_850080.1)
scret 4	(predict for NP_850081.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for YAB5	ath-r.7 for YAB5	ath-m.9 for YAB5	ath-e.2 for YAB5	ath-m.4.bio for YAB5	ath-m.4.hor for YAB5	ath-m.4.lig for YAB5	ath-m.4.str for YAB5	ath-m.4.tis for YAB5	ath-u.5 for YAB2	bra-r.6 for 103871588	bra-r.6 for 103858348	bna-r.1 for 106346333	bna-r.1 for 106377031	bna-r.1 for 106414914	ghi-r.1 for 107917100	ghi-r.1 for 107907328	ghi-r.1 for 107901565	cit-r.1 for 102624359	cit-r.1 for 102611194	gma-u.5 for 100785458	gma-u.5 for 100500091	gma-u.5 for 100500026	vvi-u.5 for 100267536	vvi-u.5 for 100256505	vvi-u.5 for 100254328	ppo-u.5 for 7472992	ppo-u.5 for 7470091	mtr-u.5 for 11416031	mtr-u.5 for 11446936	sly-u.5 for YABBY2	sly-u.5 for YABBY5a	sly-u.5 for YABBY5b	sot-r.1 for 102597616	sot-r.1 for 102605344	sot-r.1 for 102581691	nta-r.1 for 107763706	nta-r.1 for 107808962	nta-r.1 for 107785164	osa-u.5 for 4352818	osa-u.5 for 4342449	osa-u.5 for 4333584	zma-u.5 for 118471992	zma-u.5 for 103626034	zma-u.5 for 100193531	tae-r.2 for 100192178	hvu-r.1 for 123452083	sbi-r.1 for 8071489	bdi-r.1 for 100827245	bdi-r.1 for 100826382	bdi-r.1 for 100837815

Ortholog

Ortholog ID: 1260

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

YAB5

YAB2

YABBY2

YABBY5a

YABBY5b

Function^*

plant-specific transcription factor YABBY family protein

Plant-specific transcription factor YABBY family protein