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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RPN13   regulatory particle non-ATPase 13 
 ath-r.7   RPN13   regulatory particle non-ATPase 13 
 ath-m.9   RPN13   regulatory particle non-ATPase 13 
 ath-e.2   RPN13   regulatory particle non-ATPase 13 
 ath-m.4.bio   RPN13   regulatory particle non-ATPase 13 
 ath-m.4.hor   RPN13   regulatory particle non-ATPase 13 
 ath-m.4.lig   RPN13   regulatory particle non-ATPase 13 
 ath-m.4.str   RPN13   regulatory particle non-ATPase 13 
 ath-m.4.tis   RPN13   regulatory particle non-ATPase 13 
 gma-u.5   100815281   26S proteasome regulatory subunit RPN13 
 gma-u.5   100799938   26S proteasome regulatory subunit RPN13 
 vvi-u.5   100250036   26S proteasome regulatory subunit RPN13 
 ppo-u.5   7485521   26S proteasome regulatory subunit RPN13 
 mtr-u.5   11435925   26S proteasome regulatory subunit RPN13 
 sly-u.5   101258384   26S proteasome regulatory subunit RPN13 
 osa-u.5   4339809   26S proteasome regulatory subunit RPN13 

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Top 50 coexpressed genes to RPN13 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RPN13 (ath-u.5 coexpression data)

CoexMap"817200"


athRPN13 | Entrez gene ID : 817200      
Species ath gma vvi ppo mtr sly osa sot hvu tae cit sbi zma ghi cre bna nta bdi bra
Paralog 9 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03050 [list] [network] Proteasome (61 genes)
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031424.1 [sequence] [blastp]
NP_001031425.1 [sequence] [blastp]
NP_001325357.1 [sequence] [blastp]
NP_565626.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 3  (predict for NP_001031424.1)
nucl 4,  chlo 3,  cyto_nucl 3  (predict for NP_001031425.1)
nucl 4,  chlo 3,  cyto_nucl 3  (predict for NP_001325357.1)
nucl 4,  chlo 3,  cyto_nucl 3  (predict for NP_565626.1)
Subcellular
localization
TargetP
other 5  (predict for NP_001031424.1)
other 5  (predict for NP_001031425.1)
other 5  (predict for NP_001325357.1)
other 5  (predict for NP_565626.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RPN13

.
ath-r.7
for
RPN13

.
ath-m.9
for
RPN13

.
ath-e.2
for
RPN13

.
ath-m.4.bio
for
RPN13

.
ath-m.4.hor
for
RPN13

.
ath-m.4.lig
for
RPN13

.
ath-m.4.str
for
RPN13

.
ath-m.4.tis
for
RPN13

.
gma-u.5
for
100815281

.
gma-u.5
for
100799938

.
vvi-u.5
for
100250036

.
ppo-u.5
for
7485521

.
mtr-u.5
for
11435925

.
sly-u.5
for
101258384

.
osa-u.5
for
4339809

.


Ortholog ID: 10678
Species ath gma gma sly osa bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RPN13 LOC100815281 LOC100799938 LOC101258384 LOC4339809 LOC103858347 LOC100250036 LOC7485521 LOC11435925 LOC123133334 LOC123056065 LOC123442913 LOC107926275 LOC121220192 LOC106438409 LOC106388388 CHLRE_11g469450v5 LOC8066568 LOC102591202 LOC102623545 LOC100827907 LOC107800592 LOC107806049
Function* regulatory particle non-ATPase 13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 uncharacterized protein 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13-like 26S proteasome regulatory subunit RPN13
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
osa03008 Ribosome biogenesis in eukaryotes 2
osa03083 Polycomb repressive complex 2
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03050 Proteasome 3
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03050 Proteasome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03050 Proteasome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna04141 Protein processing in endoplasmic reticulum 2
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04382 Cornified envelope formation 6
bna04141 Protein processing in endoplasmic reticulum 2
bna03050 Proteasome 2
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 9
cre03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817200 100815281 100799938 101258384 4339809 103858347 100250036 7485521 11435925 123133334 123056065 123442913 107926275 121220192 106438409 106388388 5725103 8066568 102591202 102623545 100827907 107800592 107806049
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