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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PTAC12   plastid transcriptionally active 12 
 ath-r.7   PTAC12   plastid transcriptionally active 12 
 ath-m.9   PTAC12   plastid transcriptionally active 12 
 ath-e.2   PTAC12   plastid transcriptionally active 12 
 ath-m.4.bio   PTAC12   plastid transcriptionally active 12 
 ath-m.4.hor   PTAC12   plastid transcriptionally active 12 
 ath-m.4.lig   PTAC12   plastid transcriptionally active 12 
 ath-m.4.str   PTAC12   plastid transcriptionally active 12 
 ath-m.4.tis   PTAC12   plastid transcriptionally active 12 
 gma-u.5   100798194   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 vvi-u.5   100251522   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 ppo-u.5   7470815   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 mtr-u.5   11438320   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 sly-u.5   101055518   Hop-interacting protein THI030 
 osa-u.5   4325601   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 
 zma-u.5   100275546   plastid transcriptionally active chromosome 12-like protein 

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Top 50 coexpressed genes to PTAC12 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PTAC12 (ath-u.5 coexpression data)

CoexMap"818029"


athPTAC12 | Entrez gene ID : 818029      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090228 [list] [network] positive regulation of red or far-red light signaling pathway  (1 genes)  IMP  
GO:0140922 [list] [network] positive regulation of thermomorphogenesis  (3 genes)  IMP  
GO:0009650 [list] [network] UV protection  (13 genes)  IMP  
GO:0042793 [list] [network] plastid transcription  (15 genes)  IMP  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (55 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IEP IMP  
GO:1905421 [list] [network] regulation of plant organ morphogenesis  (59 genes)  IMP  
GO:0010114 [list] [network] response to red light  (73 genes)  IEP IMP  
GO:0009637 [list] [network] response to blue light  (94 genes)  IEP  
GO:0009735 [list] [network] response to cytokinin  (124 genes)  IEP  
GO:0009411 [list] [network] response to UV  (141 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:0030163 [list] [network] protein catabolic process  (264 genes)  IMP  
GO:0009266 [list] [network] response to temperature stimulus  (682 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP  
GO CC
GO:0000427 [list] [network] plastid-encoded plastid RNA polymerase complex  (12 genes)  IDA  
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0140537 [list] [network] transcription regulator activator activity  (2 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_181011.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 4  (predict for NP_181011.2)
Subcellular
localization
TargetP
chlo 5  (predict for NP_181011.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PTAC12

.
ath-r.7
for
PTAC12

.
ath-m.9
for
PTAC12

.
ath-e.2
for
PTAC12

.
ath-m.4.bio
for
PTAC12

.
ath-m.4.hor
for
PTAC12

.
ath-m.4.lig
for
PTAC12

.
ath-m.4.str
for
PTAC12

.
ath-m.4.tis
for
PTAC12

.
gma-u.5
for
100798194

.
vvi-u.5
for
100251522

.
ppo-u.5
for
7470815

.
mtr-u.5
for
11438320

.
sly-u.5
for
101055518

.
osa-u.5
for
4325601

.
zma-u.5
for
100275546

.


Ortholog ID: 10694
Species ath gma sly osa zma vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol PTAC12 LOC100798194 LOC101055518 LOC4325601 LOC100275546 LOC100251522 LOC7470815 LOC11438320 LOC123079300 LOC123062184 LOC123444516 LOC107960741 LOC107905983 LOC106396188 LOC106447486 LOC8072126 LOC102587072 LOC102620035 LOC100840007 LOC107778483 LOC107794404
Function* plastid transcriptionally active 12 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic Hop-interacting protein THI030 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like plastid transcriptionally active chromosome 12-like protein protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818029 100798194 101055518 4325601 100275546 100251522 7470815 11438320 123079300 123062184 123444516 107960741 107905983 106396188 106447486 8072126 102587072 102620035 100840007 107778483 107794404
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