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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   CP29   chloroplast RNA-binding protein 29 
 gma-u.5   100786275   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100812934   ribonucleoprotein At2g37220, chloroplastic-like 
 vvi-u.5   100246501   29 kDa ribonucleoprotein A, chloroplastic 
 ppo-u.5   7486483   RNA-binding protein CP29B, chloroplastic 
 ppo-u.5   18100185   RNA-binding protein CP29B, chloroplastic 
 mtr-u.5   11433272   29 kDa ribonucleoprotein A, chloroplastic 
 sly-u.5   101245790   29 kDa ribonucleoprotein A, chloroplastic 
 sly-u.5   101255645   29 kDa ribonucleoprotein B, chloroplastic 
 osa-u.5   4332957   RNA-binding protein CP29B, chloroplastic 
 osa-u.5   4344001   29 kDa ribonucleoprotein A, chloroplastic 
 zma-u.5   100274547   uncharacterized LOC100274547 
 zma-u.5   100282223   uncharacterized LOC100282223 
 zma-u.5   100285364   uncharacterized LOC100285364 

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Top 50 coexpressed genes to AT2G37220 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G37220 (ath-u.5 coexpression data)

CoexMap"818299"


athAT2G37220 | Entrez gene ID : 818299      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 10 2 1 2 1 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045087 [list] [network] innate immune response  (157 genes)  IDA  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO CC
GO:0010319 [list] [network] stromule  (37 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0008266 [list] [network] poly(U) RNA binding  (19 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_181259.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_181259.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_181259.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G37220

.
ath-r.7
for
AT2G37220

.
ath-m.9
for
AT2G37220

.
ath-e.2
for
AT2G37220

.
ath-m.4.bio
for
AT2G37220

.
ath-m.4.hor
for
AT2G37220

.
ath-m.4.lig
for
AT2G37220

.
ath-m.4.str
for
AT2G37220

.
ath-m.4.tis
for
AT2G37220

.
ath-u.5
for
CP29

.
gma-u.5
for
100786275

.
gma-u.5
for
100812934

.
vvi-u.5
for
100246501

.
ppo-u.5
for
7486483

.
ppo-u.5
for
18100185

.
mtr-u.5
for
11433272

.
sly-u.5
for
101245790

.
sly-u.5
for
101255645

.
osa-u.5
for
4332957

.
osa-u.5
for
4344001

.
zma-u.5
for
100274547

.
zma-u.5
for
100282223

.
zma-u.5
for
100285364

.


Ortholog ID: 3319
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit bdi bdi nta nta
Symbol AT2G37220 CP29 LOC100786275 LOC100812934 LOC101245790 LOC101255645 LOC4332957 LOC4344001 LOC100282223 LOC100274547 LOC103857667 LOC103867216 LOC100246501 LOC7486483 LOC18100185 LOC11433272 LOC123044103 LOC123092005 LOC123448659 LOC123425182 LOC107948368 LOC107889598 LOC106441071 LOC106366108 LOC8079368 LOC8080763 LOC102577524 LOC102585227 LOC102621789 LOC100832013 LOC100826795 LOC107792669 LOC107814688
Function* RNA-binding (RRM/RBD/RNP motifs) family protein chloroplast RNA-binding protein 29 RNA-binding (RRM/RBD/RNP motifs) family protein ribonucleoprotein At2g37220, chloroplastic-like 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic uncharacterized LOC100282223 uncharacterized LOC100274547 RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic-like 29 kDa ribonucleoprotein A, chloroplastic-like 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic single-stranded DNA binding protein precursor 29 kDa ribonucleoprotein B, chloroplastic-like RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein B, chloroplastic 31 kDa ribonucleoprotein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
zma03060 Protein export 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi03010 Ribosome 2
vvi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03018 RNA degradation 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 2
sot00270 Cysteine and methionine metabolism 2
sot00566 Sulfoquinovose metabolism 2
sot00620 Pyruvate metabolism 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818299 824514 100786275 100812934 101245790 101255645 4332957 4344001 100282223 100274547 103857667 103867216 100246501 7486483 18100185 11433272 123044103 123092005 123448659 123425182 107948368 107889598 106441071 106366108 8079368 8080763 102577524 102585227 102621789 100832013 100826795 107792669 107814688
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