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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   UPB1   transcription factor UPBEAT protein 
 ath-r.7   UPB1   transcription factor UPBEAT protein 
 ath-m.9   UPB1   transcription factor UPBEAT protein 
 ath-e.2   UPB1   transcription factor UPBEAT protein 
 ath-m.4.bio   UPB1   transcription factor UPBEAT protein 
 ath-m.4.hor   UPB1   transcription factor UPBEAT protein 
 ath-m.4.lig   UPB1   transcription factor UPBEAT protein 
 ath-m.4.str   UPB1   transcription factor UPBEAT protein 
 ath-m.4.tis   UPB1   transcription factor UPBEAT protein 
 vvi-u.5   100855136   transcription factor UPBEAT1 
 osa-u.5   4345571   transcription factor IBH1-like 
 zma-u.5   100381914   uncharacterized LOC100381914 
 zma-u.5   100277208   uncharacterized LOC100277208 
 zma-u.5   100275319   uncharacterized LOC100275319 

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Top 50 coexpressed genes to UPB1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UPB1 (ath-u.5 coexpression data)

CoexMap"819340"


athUPB1 | Entrez gene ID : 819340      
Species ath vvi osa zma sot hvu tae cit sbi ppo sly gma ghi cre bna nta bdi bra mtr
Paralog 9 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009646 [list] [network] response to absence of light  (58 genes)  IDA  
GO:2000280 [list] [network] regulation of root development  (79 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_566098.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  extr 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_566098.1)
Subcellular
localization
TargetP
chlo 5,  mito 4  (predict for NP_566098.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
UPB1

.
ath-r.7
for
UPB1

.
ath-m.9
for
UPB1

.
ath-e.2
for
UPB1

.
ath-m.4.bio
for
UPB1

.
ath-m.4.hor
for
UPB1

.
ath-m.4.lig
for
UPB1

.
ath-m.4.str
for
UPB1

.
ath-m.4.tis
for
UPB1

.
vvi-u.5
for
100855136

.
osa-u.5
for
4345571

.
zma-u.5
for
100381914

.
zma-u.5
for
100277208

.
zma-u.5
for
100275319

.


Ortholog ID: 3788
Species ath osa zma zma bra bra vvi tae hvu ghi bna cit
Symbol UPB1 LOC4345571 LOC100275319 LOC100277208 LOC103866390 LOC103852640 LOC100855136 LOC123124755 LOC123398258 LOC107886604 LOC106394886 LOC102615740
Function* transcription factor UPBEAT protein transcription factor IBH1-like uncharacterized LOC100275319 uncharacterized LOC100277208 transcription factor UPBEAT1 uncharacterized LOC103852640 transcription factor UPBEAT1 transcription factor bHLH150 uncharacterized LOC123398258 transcription factor PAR1 transcription factor UPBEAT1 transcription factor IBH1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 5
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 2
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00460 Cyanoamino acid metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819340 4345571 100275319 100277208 103866390 103852640 100855136 123124755 123398258 107886604 106394886 102615740
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