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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ERCC1   nucleotide repair protein 
 ath-r.7   ERCC1   nucleotide repair protein 
 ath-m.9   ERCC1   nucleotide repair protein 
 ath-e.2   ERCC1   nucleotide repair protein 
 ath-m.4.bio   ERCC1   nucleotide repair protein 
 ath-m.4.hor   ERCC1   nucleotide repair protein 
 ath-m.4.lig   ERCC1   nucleotide repair protein 
 ath-m.4.str   ERCC1   nucleotide repair protein 
 ath-m.4.tis   ERCC1   nucleotide repair protein 
 gma-u.5   100777022   DNA excision repair protein ERCC-1 
 vvi-u.5   100244316   DNA excision repair protein ERCC-1 
 ppo-u.5   18098811   DNA excision repair protein ERCC-1 
 mtr-u.5   11412075   DNA excision repair protein ERCC-1 
 sly-u.5   101261110   DNA excision repair protein ERCC-1 
 osa-u.5   4349131   DNA excision repair protein ERCC-1 
 zma-u.5   100192592   DNA excision repair protein ERCC-1 

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Top 50 coexpressed genes to ERCC1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ERCC1 (ath-u.5 coexpression data)

CoexMap"819685"


athERCC1 | Entrez gene ID : 819685      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03420 [list] [network] Nucleotide excision repair (85 genes)
ath03460 [list] [network] Fanconi anemia pathway (46 genes)
GO BP
GO:0006294 [list] [network] nucleotide-excision repair, preincision complex assembly  (1 genes)  IMP  
GO:0010213 [list] [network] non-photoreactive DNA repair  (2 genes)  IMP  
GO:0010332 [list] [network] response to gamma radiation  (14 genes)  IMP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (43 genes)  IMP  
GO:0010224 [list] [network] response to UV-B  (85 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0017108 [list] [network] 5'-flap endonuclease activity  (5 genes)  IMP  
GO:0003684 [list] [network] damaged DNA binding  (10 genes)  IEA  
Protein NP_001327616.1 [sequence] [blastp]
NP_187172.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001327616.1)
nucl 9  (predict for NP_187172.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001327616.1)
other 9  (predict for NP_187172.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ERCC1

.
ath-r.7
for
ERCC1

.
ath-m.9
for
ERCC1

.
ath-e.2
for
ERCC1

.
ath-m.4.bio
for
ERCC1

.
ath-m.4.hor
for
ERCC1

.
ath-m.4.lig
for
ERCC1

.
ath-m.4.str
for
ERCC1

.
ath-m.4.tis
for
ERCC1

.
gma-u.5
for
100777022

.
vvi-u.5
for
100244316

.
ppo-u.5
for
18098811

.
mtr-u.5
for
11412075

.
sly-u.5
for
101261110

.
osa-u.5
for
4349131

.
zma-u.5
for
100192592

.


Ortholog ID: 10063
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol ERCC1 LOC100777022 LOC101261110 LOC4349131 LOC100192592 LOC103870844 LOC100244316 LOC18098811 LOC11412075 LOC123181345 LOC123124394 LOC123434772 LOC107893275 LOC107889799 LOC125587973 LOC106453031 CHLRE_03g196651v5 LOC8065686 LOC102603702 LOC102623615 LOC100833808 LOC107776580 LOC107787358
Function* nucleotide repair protein DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1-like DNA excision repair protein ERCC-1 uncharacterized protein DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03420 Nucleotide excision repair 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03420 Nucleotide excision repair 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 2
bna03460 Fanconi anemia pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03008 Ribosome biogenesis in eukaryotes 5
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819685 100777022 101261110 4349131 100192592 103870844 100244316 18098811 11412075 123181345 123124394 123434772 107893275 107889799 125587973 106453031 5718766 8065686 102603702 102623615 100833808 107776580 107787358
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