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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LUL4   RING/U-box superfamily protein 
 ath-r.7   LUL4   RING/U-box superfamily protein 
 ath-m.9   LUL4   RING/U-box superfamily protein 
 ath-e.2   LUL4   RING/U-box superfamily protein 
 ath-m.4.bio   LUL4   RING/U-box superfamily protein 
 ath-m.4.hor   LUL4   RING/U-box superfamily protein 
 ath-m.4.lig   LUL4   RING/U-box superfamily protein 
 ath-m.4.str   LUL4   RING/U-box superfamily protein 
 ath-m.4.tis   LUL4   RING/U-box superfamily protein 
 ath-u.5   LOG2   RING/U-box superfamily protein 
 ath-u.5   LUL2   RING/U-box superfamily protein 
 ath-u.5   LUL1   RING/U-box superfamily protein 
 gma-u.5   100786054   probable E3 ubiquitin-protein ligase LUL4 
 gma-u.5   100784713   probable E3 ubiquitin-protein ligase LOG2 
 gma-u.5   100783831   probable E3 ubiquitin-protein ligase LOG2 
 vvi-u.5   100266660   probable E3 ubiquitin-protein ligase LUL4 
 vvi-u.5   100852866   probable E3 ubiquitin-protein ligase LUL3 
 vvi-u.5   100250186   probable E3 ubiquitin-protein ligase LOG2 
 ppo-u.5   18100200   probable E3 ubiquitin-protein ligase LOG2 
 ppo-u.5   18098808   probable E3 ubiquitin-protein ligase LUL4 
 ppo-u.5   7497974   probable E3 ubiquitin-protein ligase LUL4 
 mtr-u.5   11423275   probable E3 ubiquitin-protein ligase LOG2 
 mtr-u.5   25486085   probable E3 ubiquitin-protein ligase LUL3 
 mtr-u.5   25484017   probable E3 ubiquitin-protein ligase LOG2 
 sly-u.5   101268819   probable E3 ubiquitin-protein ligase LOG2 
 sly-u.5   101247573   probable E3 ubiquitin-protein ligase LOG2 
 sly-u.5   101260179   probable E3 ubiquitin-protein ligase LUL4 
 osa-u.5   4348266   probable E3 ubiquitin-protein ligase LOG2 
 osa-u.5   9266835   probable E3 ubiquitin-protein ligase LUL4 
 osa-u.5   4332287   probable E3 ubiquitin-protein ligase LOG2 
 zma-u.5   100381407   uncharacterized LOC100381407 
 zma-u.5   103630329   probable E3 ubiquitin-protein ligase LUL3 
 zma-u.5   103633744   probable E3 ubiquitin-protein ligase LUL2 

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Top 50 coexpressed genes to LUL4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LUL4 (ath-u.5 coexpression data)

CoexMap"819787"


athLUL4 | Entrez gene ID : 819787      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 12 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
Protein NP_566274.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  nucl 4,  cyto_mito 3  (predict for NP_566274.1)
Subcellular
localization
TargetP
mito 6,  other 3  (predict for NP_566274.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LUL4

.
ath-r.7
for
LUL4

.
ath-m.9
for
LUL4

.
ath-e.2
for
LUL4

.
ath-m.4.bio
for
LUL4

.
ath-m.4.hor
for
LUL4

.
ath-m.4.lig
for
LUL4

.
ath-m.4.str
for
LUL4

.
ath-m.4.tis
for
LUL4

.
ath-u.5
for
LOG2

.
ath-u.5
for
LUL2

.
ath-u.5
for
LUL1

.
gma-u.5
for
100786054

.
gma-u.5
for
100784713

.
gma-u.5
for
100783831

.
vvi-u.5
for
100266660

.
vvi-u.5
for
100852866

.
vvi-u.5
for
100250186

.
ppo-u.5
for
18100200

.
ppo-u.5
for
18098808

.
ppo-u.5
for
7497974

.
mtr-u.5
for
11423275

.
mtr-u.5
for
25486085

.
mtr-u.5
for
25484017

.
sly-u.5
for
101268819

.
sly-u.5
for
101247573

.
sly-u.5
for
101260179

.
osa-u.5
for
4348266

.
osa-u.5
for
9266835

.
osa-u.5
for
4332287

.
zma-u.5
for
100381407

.
zma-u.5
for
103630329

.
zma-u.5
for
103633744

.


Ortholog ID: 842
Species ath ath gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol LUL3 LUL4 LOC100789032 LOC101055522 LOC101268819 LOC4325441 LOC4348266 LOC109939520 LOC103633744 LOC103847936 LOC103870520 LOC100260106 LOC100250186 LOC7486475 LOC7454248 LOC25486085 LOC11423275 LOC123085317 LOC123161381 LOC123449124 LOC123442058 LOC107899650 LOC107948357 LOC106360584 LOC106452764 CHLRE_03g145847v5 CHLRE_03g173900v5 LOC8085095 LOC8078837 LOC102583568 LOC102594177 LOC102631259 LOC102629229 LOC100829291 LOC100831887 LOC107792210 LOC107764583
Function* RING/U-box superfamily protein RING/U-box superfamily protein probable E3 ubiquitin-protein ligase LOG2 Hop-interacting protein THI037 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LUL2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LUL2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LUL4 probable E3 ubiquitin-protein ligase LUL3 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LUL2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LUL2 probable E3 ubiquitin-protein ligase LUL4 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LUL1 probable E3 ubiquitin-protein ligase LOG2 uncharacterized protein uncharacterized protein probable E3 ubiquitin-protein ligase LUL3 probable E3 ubiquitin-protein ligase LUL2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LOG2 probable E3 ubiquitin-protein ligase LUL4 probable E3 ubiquitin-protein ligase LUL4 probable E3 ubiquitin-protein ligase LUL2 putative E3 ubiquitin-protein ligase LUL4 putative E3 ubiquitin-protein ligase LUL4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00100 Steroid biosynthesis 4
gma04141 Protein processing in endoplasmic reticulum 3
gma04144 Endocytosis 2
gma04145 Phagosome 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 8
zma04517 IgSF CAM signaling 8
zma05100 Bacterial invasion of epithelial cells 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma03083 Polycomb repressive complex 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00280 Valine, leucine and isoleucine degradation 5
bra00640 Propanoate metabolism 3
bra00410 beta-Alanine metabolism 3
bra01200 Carbon metabolism 3
bra01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 2
vvi03272 Virion - Hepatitis viruses 2
vvi04144 Endocytosis 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu01230 Biosynthesis of amino acids 2
hvu00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 5
sbi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04075 Plant hormone signal transduction 2
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00051 Fructose and mannose metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 3
nta04141 Protein processing in endoplasmic reticulum 2
nta04142 Lysosome 2
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03083 Polycomb repressive complex 2
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832027 819787 100789032 101055522 101268819 4325441 4348266 109939520 103633744 103847936 103870520 100260106 100250186 7486475 7454248 25486085 11423275 123085317 123161381 123449124 123442058 107899650 107948357 106360584 106452764 66052683 5728890 8085095 8078837 102583568 102594177 102631259 102629229 100829291 100831887 107792210 107764583
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